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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:366.2 nTPM
HPA:366.2 nTPM
GTEx:242.8 nTPM
FANTOM5:1509.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 366.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 355.6
2048 Male, age 55, midline 375.9
1981 Female, age 72, midline 371.0
2565 Male, age 75, midline 346.4
2194 Female, age 79, both hemispheres 343.5
2816 Male, age 47, midline 341.4
Cervical spinal cord, dorsal horn
nTPM: 352.1
2173 Female, age 72, unknown 366.7
2721 Male, age 90, both hemispheres 358.8
1877 Male, age 55, unknown 354.2
2069 Male, age 47, both hemispheres 354.1
2297 Male, age 75, both hemispheres 345.5
2296 Male, age 66, both hemispheres 333.1
Cervical spinal cord, ventral horn
nTPM: 366.2
2098 Female, age 72, unknown 396.1
2480 Male, age 75, both hemispheres 374.2
2809 Male, age 90, both hemispheres 374.1
2295 Male, age 66, both hemispheres 370.4
2068 Male, age 55, unknown 347.3
2820 Female, age 79, both hemispheres 335.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 242.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 242.8
Samples: 159

Max nTPM: 916.1
Min nTPM: 49.6
Std nTPM: 151.1
Median nTPM: 203.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 916.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 764.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 711.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 696.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 681.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 619.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 569.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 557.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 550.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 508.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 491.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 488.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 488.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 471.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 469.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 457.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 449.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 446.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 437.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 417.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 404.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 398.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 396.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 389.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 386.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 375.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 368.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 353.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 352.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 348.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 345.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 335.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 331.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 322.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 319.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 311.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 309.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 308.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 306.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 302.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 300.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 298.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 294.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 292.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 288.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 284.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 275.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 273.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 271.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 269.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 265.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 264.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 256.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 255.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 251.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 248.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 248.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 235.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 234.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 232.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 226.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 224.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 222.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 221.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 220.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 220.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 219.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 217.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 217.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 216.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 211.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 210.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 209.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 207.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 207.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 206.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 205.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 203.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 197.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 196.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 196.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 195.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 192.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 190.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 188.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 187.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 185.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 183.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 182.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 181.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 179.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 179.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 178.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 177.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 173.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 173.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 173.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 171.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 169.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 168.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 166.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 165.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 164.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 162.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 159.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 159.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 158.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 148.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 147.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 145.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 142.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 142.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 139.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 138.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 138.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 135.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 134.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 133.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 131.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 129.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 123.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 122.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 121.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 121.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 117.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 114.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 113.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 112.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 110.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 109.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 109.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 108.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 106.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 104.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 104.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 102.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 99.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 98.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 97.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 94.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 92.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 92.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 89.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 88.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 88.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 85.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 79.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 76.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 60.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 60.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 49.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1509.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1509.0
FF:10181-103D1 60 years, female 2039.2
FF:10159-103A6 76 years, female 978.8

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