MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:390.6 nTPM
HPA:390.6 nTPM
GTEx:781.3 nTPM
FANTOM5:647.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 390.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 359.2
2586 Male, age 75, left hemisphere 381.9
2828 Female, age 72, unknown 371.2
1833 Male, age 53, unknown 367.9
1827 Male, age 72, unknown 363.4
1870 Female, age 42, unknown 362.9
1830 Male, age 51, unknown 357.8
2411 Female, age 72, unknown 355.9
2019 Male, age 18, unknown 346.0
2666 Male, age 74, left hemisphere 345.9
2219 Male, age 76, both hemispheres 338.7
Dorsal raphe nucleus
nTPM: 381.6
2016 Female, age 72, unknown 396.1
1828 Male, age 53, unknown 395.4
2047 Male, age 72, unknown 382.6
2298 Female, age 72, unknown 368.4
2750 Male, age 76, both hemispheres 365.2
Inferior colliculus
nTPM: 381.6
1848 Female, age 42, unknown 394.0
2097 Female, age 72, unknown 383.4
1890 Male, age 53, unknown 376.5
2849 Male, age 72, unknown 372.4
Median raphe nucleus
nTPM: 371.2
2220 Male, age 76, midline 371.2
Pedunculopontine tegmental nucleus
nTPM: 365.0
2334 Male, age 80, both hemispheres 376.4
1921 Female, age 85, both hemispheres 365.1
2338 Male, age 61, both hemispheres 353.5
Periaquaductal grey, anterior
nTPM: 366.7
1795 Male, age 51, unknown 370.9
2502 Female, age 75, unknown 369.4
1947 Male, age 18, unknown 359.8
Periaquaductal grey, dorsal
nTPM: 385.2
2850 Male, age 76, both hemispheres 426.2
1840 Male, age 53, unknown 391.8
2464 Female, age 72, unknown 365.8
1831 Male, age 72, unknown 357.1
Periaquaductal grey, lateral
nTPM: 390.6
2140 Male, age 76, both hemispheres 419.8
2053 Male, age 18, unknown 386.3
2272 Male, age 74, both hemispheres 365.7
Pretectal area
nTPM: 372.0
2316 Male, age 76, right hemisphere 401.2
2273 Male, age 74, both hemispheres 395.8
2667 Female, age 75, unknown 384.3
1944 Female, age 72, unknown 383.7
2825 Male, age 18, unknown 372.9
1816 Male, age 51, unknown 370.1
1817 Female, age 42, unknown 369.9
2224 Female, age 72, unknown 365.8
1815 Male, age 53, unknown 355.8
2007 Male, age 72, unknown 346.4
2407 Male, age 75, both hemispheres 346.4
Red nucleus
nTPM: 375.2
2227 Male, age 72, unknown 394.7
1821 Female, age 72, unknown 393.7
2769 Male, age 72, unknown 392.4
2823 Male, age 76, right hemisphere 388.5
1954 Female, age 42, unknown 387.3
2503 Female, age 72, unknown 380.9
2725 Female, age 75, unknown 378.6
1904 Male, age 53, unknown 368.7
1865 Male, age 51, unknown 364.7
2588 Male, age 74, left hemisphere 360.4
2785 Male, age 18, unknown 350.3
2584 Male, age 75, left hemisphere 342.2
Substantia nigra
nTPM: 389.0
2699 Male, age 18, unknown 462.4
1916 Female, age 42, unknown 411.0
1851 Male, age 51, unknown 396.5
2409 Female, age 72, unknown 394.4
2241 Male, age 72, unknown 392.6
1889 Female, age 72, unknown 380.5
2590 Female, age 75, unknown 379.6
2665 Male, age 74, both hemispheres 361.4
1941 Male, age 53, unknown 358.1
2583 Male, age 75, right hemisphere 353.7
Superior colliculus
nTPM: 366.4
1995 Male, age 72, unknown 378.0
1796 Male, age 53, unknown 374.5
2087 Female, age 72, unknown 374.0
1839 Male, age 51, unknown 368.8
2261 Male, age 18, unknown 368.6
2587 Male, age 74, left hemisphere 366.7
1913 Female, age 42, unknown 363.9
1895 Male, age 76, right hemisphere 360.4
2664 Male, age 75, both hemispheres 357.8
2668 Female, age 75, unknown 351.6
Ventral tegmental area
nTPM: 379.5
2410 Female, age 72, unknown 394.8
2021 Male, age 53, unknown 390.4
2218 Male, age 76, both hemispheres 384.7
1915 Female, age 42, unknown 377.2
1942 Male, age 51, unknown 369.3
2223 Female, age 72, unknown 360.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 781.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 781.3
Samples: 139

Max nTPM: 2994.5
Min nTPM: 89.4
Std nTPM: 557.3
Median nTPM: 600.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2994.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2882.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2881.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2238.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2097.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1997.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1966.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1872.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1862.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1762.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1590.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 647.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 647.5
FF:10158-103A5 76 years, female 647.5

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The Human Protein Atlas

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