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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:394.6 nTPM
HPA:394.6 nTPM
FANTOM5:2146.3 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 394.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 350.2
1984 Male, age 76, both hemispheres 372.5
2301 Female, age 85, both hemispheres 350.1
2090 Male, age 80, both hemispheres 340.0
2188 Female, age 91, both hemispheres 338.1
Dorsal cochlear nucleus
nTPM: 373.0
2370 Male, age 61, both hemispheres 387.9
2058 Male, age 76, both hemispheres 383.5
2802 Male, age 74, right hemisphere 376.7
2378 Male, age 80, both hemispheres 360.1
2187 Female, age 91, both hemispheres 356.8
Dorsal tegmental nucleus
nTPM: 374.4
1936 Male, age 76, left hemisphere 406.3
2083 Male, age 80, both hemispheres 385.6
2326 Male, age 74, both hemispheres 357.7
2358 Male, age 61, both hemispheres 348.1
Dorsolateral tegmental area
nTPM: 369.8
2654 Male, age 80, both hemispheres 397.0
2141 Male, age 76, both hemispheres 377.2
2360 Male, age 74, both hemispheres 372.4
2751 Female, age 85, both hemispheres 361.5
2337 Male, age 61, both hemispheres 341.0
Kolliker-Fuse nucleus
nTPM: 387.7
2315 Male, age 76, right hemisphere 434.7
2163 Male, age 80, both hemispheres 387.9
2793 Female, age 91, left hemisphere 340.5
Lateral lemniscal nuclei
nTPM: 348.4
2036 Male, age 80, both hemispheres 364.9
2169 Male, age 76, both hemispheres 359.2
2453 Male, age 74, right hemisphere 347.5
2746 Female, age 85, left hemisphere 338.2
2320 Female, age 91, left hemisphere 332.0
Lateral parabrachial nucleus
nTPM: 361.4
2792 Male, age 76, both hemispheres 398.5
2139 Female, age 85, right hemisphere 359.4
2013 Male, age 80, both hemispheres 347.8
2790 Male, age 61, both hemispheres 339.8
Lateral vestibular nucleus
nTPM: 367.4
2184 Male, age 76, both hemispheres 383.7
2311 Male, age 80, both hemispheres 351.2
Locus coeruleus
nTPM: 381.8
2014 Male, age 55, unknown 424.9
2317 Female, age 72, unknown 402.8
1980 Male, age 76, both hemispheres 382.5
2123 Female, age 91, both hemispheres 380.8
2788 Male, age 74, unknown 368.0
2720 Male, age 74, both hemispheres 360.5
2162 Male, age 80, both hemispheres 352.8
Medial olivary nucleus
nTPM: 368.1
1962 Male, age 76, both hemispheres 389.7
2138 Female, age 91, both hemispheres 388.8
2851 Male, age 80, both hemispheres 347.7
1943 Male, age 61, both hemispheres 346.1
Medial parabrachial nucleus
nTPM: 363.0
2786 Male, age 76, both hemispheres 387.4
2854 Male, age 80, both hemispheres 363.3
2170 Female, age 91, both hemispheres 360.7
2156 Male, age 61, both hemispheres 352.4
2463 Female, age 85, right hemisphere 351.3
Medial periolivary nuclei
nTPM: 345.9
2791 Male, age 74, right hemisphere 359.3
2063 Male, age 76, both hemispheres 354.8
2458 Female, age 91, both hemispheres 341.7
2081 Male, age 80, both hemispheres 337.9
2171 Female, age 85, both hemispheres 335.6
Motor facial nucleus
nTPM: 349.6
2795 Female, age 91, both hemispheres 366.2
2062 Male, age 76, both hemispheres 357.7
2126 Male, age 61, both hemispheres 351.1
2327 Male, age 80, both hemispheres 346.9
2365 Male, age 74, right hemisphere 346.9
2697 Female, age 85, both hemispheres 328.9
Motor trigeminal nucleus
nTPM: 355.3
2309 Male, age 76, both hemispheres 387.5
2335 Male, age 61, both hemispheres 355.6
2560 Male, age 74, both hemispheres 348.3
2079 Male, age 80, both hemispheres 344.3
2321 Female, age 91, both hemispheres 341.1
Nuclei of the trapezoid body
nTPM: 350.8
1983 Male, age 76, both hemispheres 368.0
2368 Female, age 91, both hemispheres 356.2
2166 Male, age 80, both hemispheres 344.5
2735 Female, age 85, both hemispheres 343.6
2159 Male, age 61, both hemispheres 341.7
Paramedian reticular nucleus
nTPM: 365.5
2052 Male, age 76, both hemispheres 394.7
2057 Male, age 80, both hemispheres 360.7
2313 Male, age 61, both hemispheres 355.5
2050 Female, age 85, both hemispheres 351.2
Pontine nuclei
nTPM: 341.2
1968 Male, age 76, left hemisphere 352.1
2727 Male, age 61, right hemisphere 346.1
2115 Male, age 80, left hemisphere 343.1
2787 Female, age 85, both hemispheres 342.9
2319 Female, age 91, both hemispheres 338.1
2454 Male, age 74, left hemisphere 337.9
1863 Male, age 55, unknown 335.8
2109 Female, age 72, unknown 333.2
Pontine raphe nucleus
nTPM: 363.7
2853 Male, age 76, midline 374.4
2122 Female, age 85, midline 353.1
Posteroventral cochlear nucleus
nTPM: 360.3
2752 Female, age 85, both hemispheres 384.6
2371 Male, age 61, both hemispheres 378.3
2070 Male, age 76, both hemispheres 364.6
2135 Female, age 91, both hemispheres 338.2
2341 Male, age 80, both hemispheres 335.7
Principal sensory trigeminal nucleus
nTPM: 355.6
2324 Male, age 76, both hemispheres 390.1
2008 Male, age 80, left hemisphere 350.3
2158 Male, age 61, both hemispheres 345.7
2367 Female, age 91, left hemisphere 336.2
Reticular pontine nucleus, caudal
nTPM: 352.7
2092 Male, age 76, both hemispheres 364.3
2332 Male, age 80, right hemisphere 358.0
2457 Female, age 91, both hemispheres 346.3
2559 Male, age 74, both hemispheres 342.3
Reticular pontine nucleus, oral
nTPM: 356.8
1939 Male, age 80, both hemispheres 386.9
2167 Male, age 76, both hemispheres 382.9
2012 Female, age 85, both hemispheres 351.5
2366 Female, age 91, both hemispheres 342.4
2361 Male, age 74, both hemispheres 320.3
Reticulotegmental nucleus
nTPM: 366.3
2333 Male, age 80, both hemispheres 382.7
2325 Male, age 76, both hemispheres 366.7
2322 Female, age 91, both hemispheres 361.0
2452 Male, age 74, both hemispheres 354.7
Spinal trigeminal nucleus, oral
nTPM: 368.7
1978 Male, age 76, both hemispheres 376.1
2737 Female, age 85, both hemispheres 371.8
2164 Male, age 80, both hemispheres 358.1
Subcoeruleus area
nTPM: 365.1
2323 Female, age 91, left hemisphere 383.6
1958 Male, age 80, both hemispheres 374.1
2451 Male, age 74, both hemispheres 367.7
2369 Female, age 85, left hemisphere 352.7
2089 Male, age 76, left hemisphere 347.5
Superior olive
nTPM: 347.9
2364 Male, age 74, right hemisphere 357.4
2020 Male, age 76, both hemispheres 353.8
2561 Female, age 91, both hemispheres 345.9
2329 Male, age 80, right hemisphere 344.5
1875 Female, age 85, both hemispheres 338.0
Superior vestibular nucleus
nTPM: 394.6
2061 Male, age 76, both hemispheres 428.3
2383 Male, age 74, both hemispheres 387.9
2015 Male, age 80, both hemispheres 367.6
Ventral periolivary nuclei
nTPM: 346.6
2023 Male, age 76, both hemispheres 354.5
2165 Male, age 80, both hemispheres 349.6
2130 Female, age 85, both hemispheres 341.4
2794 Female, age 91, left hemisphere 341.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 351.5
2359 Male, age 61, both hemispheres 357.3
1959 Male, age 76, both hemispheres 353.8
2456 Female, age 91, both hemispheres 353.7
2840 Female, age 85, both hemispheres 352.7
2161 Male, age 80, both hemispheres 347.4
2449 Male, age 74, both hemispheres 343.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2146.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 2146.3
FF:10182-103D2 60 years, female 3187.0
FF:10165-103B3 76 years, female 1105.7
Pons
Scaled Tags Per Million: 412.0
FF:10033-101E6 18-54 years, mixed 412.0

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