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ARL6IP1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:206.4 nTPM
HPA:206.4 nTPM
GTEx:237.8 nTPM
FANTOM5:226.1 Scaled Tags Per Million
Pig:40.3 nTPM
Mouse:249.2 nTPM
Allen mouse:16.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 206.4
Sample id Sample description nTPM
Amygdala
nTPM: 189.1
2514 Male, age 75, right hemisphere 214.0
1987 Female, age 91, left hemisphere 196.0
2814 Male, age 76, right hemisphere 191.3
2517 Female, age 94, left hemisphere 173.3
2695 Female, age 67, right hemisphere 171.0
Basal amygdala
nTPM: 173.0
2609 Male, age 75, right hemisphere 200.0
2243 Female, age 91, right hemisphere 182.5
2110 Male, age 80, left hemisphere 181.6
1955 Male, age 76, both hemispheres 175.7
2685 Female, age 94, left hemisphere 162.6
2827 Female, age 67, right hemisphere 135.4
Central amygdala
nTPM: 177.7
2515 Male, age 75, right hemisphere 187.3
1905 Male, age 76, both hemispheres 181.8
2239 Male, age 80, left hemisphere 178.9
2701 Female, age 91, right hemisphere 173.3
2826 Female, age 94, left hemisphere 167.5
Corticomedial amygdala
nTPM: 184.1
2428 Male, age 75, right hemisphere 203.3
2429 Female, age 94, left hemisphere 195.2
2242 Female, age 91, right hemisphere 195.1
2829 Male, age 80, left hemisphere 193.4
2240 Male, age 76, both hemispheres 175.4
2535 Female, age 67, right hemisphere 141.9
Lateral amygdala
nTPM: 168.3
1883 Male, age 76, both hemispheres 193.9
2516 Male, age 75, right hemisphere 191.6
2534 Female, age 94, left hemisphere 167.3
2255 Female, age 91, right hemisphere 163.1
2256 Male, age 80, left hemisphere 159.7
2830 Female, age 67, right hemisphere 133.8
Stria terminalis, bed nucleus
nTPM: 206.4
1974 Female, age 91, both hemispheres 232.1
2486 Female, age 94, both hemispheres 215.0
2201 Male, age 74, unknown 172.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 237.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 237.8
Samples: 152

Max nTPM: 660.7
Min nTPM: 65.3
Std nTPM: 72.8
Median nTPM: 232.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 660.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 610.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 418.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 367.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 366.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 347.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 343.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 334.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 334.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 328.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 325.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 323.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 322.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 321.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 314.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 311.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 304.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 301.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 293.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 293.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 293.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 289.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 287.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 287.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 286.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 285.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 284.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 283.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 281.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 279.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 278.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 277.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 277.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 276.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 275.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 274.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 274.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 274.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 272.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 270.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 270.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 269.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 268.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 267.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 266.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 265.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 263.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 262.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 262.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 260.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 259.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 258.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 258.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 254.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 254.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 253.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 253.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 253.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 252.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 251.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 248.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 244.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 244.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 243.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 241.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 241.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 241.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 241.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 240.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 238.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 237.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 236.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 235.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 233.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 233.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 233.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 231.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 231.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 229.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 229.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 227.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 227.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 226.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 226.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 226.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 225.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 225.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 222.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 221.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 219.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 217.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 215.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 213.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 213.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 212.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 211.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 209.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 208.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 208.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 207.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 206.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 206.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 206.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 206.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 204.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 203.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 201.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 201.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 199.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 199.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 199.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 198.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 197.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 196.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 193.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 191.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 190.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 189.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 186.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 183.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 182.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 179.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 179.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 178.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 178.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 178.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 177.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 176.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 169.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 168.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 168.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 166.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 164.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 164.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 163.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 159.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 156.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 155.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 155.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 153.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 151.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 147.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 141.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 128.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 123.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 122.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 119.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 226.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 226.1
FF:10151-102I7 76 years, female 226.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.3
Pig sample Sample description nTPM
Amygdala
nTPM: 40.3
Samples: 4

Max nTPM: 49.8
Min nTPM: 36.2
Sample A Female 49.8
Sample B Female 36.2
Sample C Male 38.3
Sample D Male 36.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 249.2
Samples: 4

Max nTPM: 258.7
Min nTPM: 243.1
Sample A Male 258.7
Sample B Male 243.1
Sample C Female 245.5
Sample D Female 249.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.1
69526874 Antisense, RP_050421_01_G10, Mouse strain C57BL/6J (56 days, male) 16.1

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