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ARL6IP1
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:316.0 nTPM
GTEx:316.0 nTPM
FANTOM5:264.5 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:374.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 316.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 316.0
Samples: 105

Max nTPM: 505.0
Min nTPM: 185.9
Std nTPM: 73.5
Median nTPM:
162_1 79 years, female 505.0
43_1 64 years, female 503.0
35_1 74 years, female 481.9
142_1 61 years, female 466.6
149_1 88 years, male 462.8
490_1 67 years, female 455.0
126_1 63 years, male 453.0
491_1 89 years, female 428.3
466_1 57 years, female 424.1
415_1 77 years, female 424.0
81_1 67 years, male 416.9
32_1 67 years, male 409.4
139_1 64 years, female 402.9
495_1 57 years, female 400.4
518_1 75 years, female 398.0
413_1 59 years, female 394.3
217_1 76 years, male 392.5
6_1 73 years, female 392.3
153_1 70 years, female 391.2
9_1 66 years, female 383.6
137_1 83 years, male 382.6
324_1 76 years, male 382.5
2_1 77 years, female 380.0
89_1 63 years, male 379.0
117_1 61 years, male 378.1
145_1 84 years, male 378.1
18_1 88 years, male 377.3
17_1 71 years, male 370.0
316_1 62 years, male 366.7
499_1 55 years, female 364.1
322_1 76 years, male 361.3
375_1 74 years, female 359.0
42_1 85 years, male 358.9
501_1 88 years, male 356.3
4_1 88 years, female 342.5
99_1 64 years, male 341.2
115_1 83 years, male 340.4
109_1 81 years, female 337.7
414_1 84 years, female 337.3
266_1 85 years, male 335.1
315_1 62 years, female 334.8
237_1 82 years, male 333.9
468_1 89 years, male 324.4
119_1 70 years, female 319.9
389_1 86 years, female 316.6
120_1 70 years, female 316.1
480_1 63 years, male 314.1
405_1 91 years, male 309.1
526_1 61 years, male 308.9
311_1 78 years, male 299.4
319_1 81 years, male 296.7
265_1 87 years, male 296.0
335_1 73 years, female 296.0
396_1 62 years, male 295.6
251_1 78 years, male 294.0
377_1 82 years, female 294.0
348_1 84 years, male 293.1
313_1 79 years, female 292.0
229_1 69 years, female 290.8
246_1 77 years, male 288.3
352_1 62 years, male 286.6
318_1 68 years, male 286.4
404_1 82 years, female 286.3
386_1 76 years, male 284.4
379_1 60 years, male 282.0
286_1 68 years, female 278.7
347_1 72 years, male 278.7
321_1 62 years, female 277.6
189_1 76 years, male 276.9
447_1 81 years, male 276.7
307_1 66 years, female 276.2
288_1 66 years, female 275.7
355_1 70 years, female 272.5
320_1 89 years, female 271.2
517_1 88 years, male 269.4
292_1 71 years, male 269.2
406_1 79 years, male 265.3
354_1 81 years, female 264.6
503_1 68 years, male 263.9
376_1 75 years, female 262.5
243_1 75 years, male 258.8
173_1 67 years, male 257.1
291_1 76 years, male 254.1
314_1 67 years, male 254.0
384_1 83 years, male 250.6
254_1 77 years, female 247.4
506_1 65 years, male 244.2
425_1 59 years, female 243.9
350_1 84 years, female 240.9
293_1 68 years, female 240.4
394_1 75 years, female 236.3
264_1 73 years, female 233.9
317_1 60 years, male 230.9
172_1 72 years, female 229.5
356_1 87 years, female 224.7
41_1 94 years, female 224.2
353_1 82 years, female 222.3
218_1 71 years, female 220.0
177_1 74 years, male 219.6
308_1 70 years, female 215.1
295_1 61 years, female 212.3
349_1 83 years, male 210.4
351_1 91 years, male 202.2
452_1 88 years, female 187.8
163_1 78 years, male 185.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 264.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 264.5
FF:10030-101E3 24-65 years, mixed 264.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.4
Pig sample Sample description nTPM
Retina
nTPM: 23.4
Samples: 4

Max nTPM: 26.9
Min nTPM: 21.4
Sample A Female 22.4
Sample B Female 26.9
Sample C Male 22.7
Sample D Male 21.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 374.1
Mouse sample Sample description nTPM
Retina
nTPM: 374.1
Samples: 4

Max nTPM: 402.6
Min nTPM: 332.8
Sample A Male 395.6
Sample B Male 332.8
Sample C Female 402.6
Sample D Female 365.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.