MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:197.8 nTPM
HPA:197.8 nTPM
GTEx:199.7 nTPM
FANTOM5:162.9 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:311.1 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 197.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 178.2
1827 Male, age 72, unknown 196.3
2411 Female, age 72, unknown 193.9
1870 Female, age 42, unknown 180.5
2019 Male, age 18, unknown 177.7
2219 Male, age 76, both hemispheres 174.5
2666 Male, age 74, left hemisphere 173.4
1833 Male, age 53, unknown 172.8
2828 Female, age 72, unknown 172.2
2586 Male, age 75, left hemisphere 172.1
1830 Male, age 51, unknown 168.0
Dorsal raphe nucleus
nTPM: 189.7
2298 Female, age 72, unknown 209.7
2047 Male, age 72, unknown 199.1
1828 Male, age 53, unknown 183.0
2750 Male, age 76, both hemispheres 182.5
2016 Female, age 72, unknown 174.0
Inferior colliculus
nTPM: 181.4
2097 Female, age 72, unknown 198.3
1848 Female, age 42, unknown 182.8
1890 Male, age 53, unknown 173.5
2849 Male, age 72, unknown 171.2
Median raphe nucleus
nTPM: 197.8
2220 Male, age 76, midline 197.8
Pedunculopontine tegmental nucleus
nTPM: 181.7
1921 Female, age 85, both hemispheres 193.1
2334 Male, age 80, both hemispheres 183.0
2338 Male, age 61, both hemispheres 169.1
Periaquaductal grey, anterior
nTPM: 184.8
1947 Male, age 18, unknown 193.4
1795 Male, age 51, unknown 181.4
2502 Female, age 75, unknown 179.5
Periaquaductal grey, dorsal
nTPM: 176.6
1840 Male, age 53, unknown 185.8
2464 Female, age 72, unknown 175.8
2850 Male, age 76, both hemispheres 174.3
1831 Male, age 72, unknown 170.5
Periaquaductal grey, lateral
nTPM: 169.4
2272 Male, age 74, both hemispheres 172.3
2053 Male, age 18, unknown 170.9
2140 Male, age 76, both hemispheres 164.9
Pretectal area
nTPM: 187.4
1816 Male, age 51, unknown 204.5
1817 Female, age 42, unknown 201.7
1944 Female, age 72, unknown 198.7
2007 Male, age 72, unknown 197.7
2224 Female, age 72, unknown 196.0
1815 Male, age 53, unknown 191.7
2667 Female, age 75, unknown 187.5
2273 Male, age 74, both hemispheres 185.5
2825 Male, age 18, unknown 173.3
2407 Male, age 75, both hemispheres 164.2
2316 Male, age 76, right hemisphere 160.9
Red nucleus
nTPM: 166.6
1821 Female, age 72, unknown 185.7
2725 Female, age 75, unknown 179.5
2785 Male, age 18, unknown 172.9
2503 Female, age 72, unknown 170.9
1954 Female, age 42, unknown 167.9
2588 Male, age 74, left hemisphere 163.6
2823 Male, age 76, right hemisphere 161.7
2584 Male, age 75, left hemisphere 161.6
1904 Male, age 53, unknown 160.2
1865 Male, age 51, unknown 159.8
2227 Male, age 72, unknown 158.0
2769 Male, age 72, unknown 157.3
Substantia nigra
nTPM: 190.9
2241 Male, age 72, unknown 214.0
1916 Female, age 42, unknown 209.9
1941 Male, age 53, unknown 202.7
1889 Female, age 72, unknown 202.1
1851 Male, age 51, unknown 197.5
2409 Female, age 72, unknown 185.4
2699 Male, age 18, unknown 178.3
2590 Female, age 75, unknown 176.5
2665 Male, age 74, both hemispheres 171.8
2583 Male, age 75, right hemisphere 170.6
Superior colliculus
nTPM: 175.2
1796 Male, age 53, unknown 189.9
2087 Female, age 72, unknown 186.9
2261 Male, age 18, unknown 180.6
1895 Male, age 76, right hemisphere 176.6
2668 Female, age 75, unknown 176.2
2587 Male, age 74, left hemisphere 175.0
1839 Male, age 51, unknown 174.8
2664 Male, age 75, both hemispheres 169.1
1913 Female, age 42, unknown 163.1
1995 Male, age 72, unknown 160.0
Ventral tegmental area
nTPM: 186.5
2410 Female, age 72, unknown 199.1
1915 Female, age 42, unknown 198.5
2218 Male, age 76, both hemispheres 185.6
1942 Male, age 51, unknown 185.1
2223 Female, age 72, unknown 178.9
2021 Male, age 53, unknown 171.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 199.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.7
Samples: 139

Max nTPM: 403.0
Min nTPM: 94.5
Std nTPM: 63.3
Median nTPM: 190.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 403.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 388.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 368.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 357.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 334.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 333.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 323.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 321.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 320.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 311.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 310.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.9
FF:10158-103A5 76 years, female 162.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.1
Pig sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 58.7
Min nTPM: 48.2
Sample A Female 48.2
Sample B Female 48.3
Sample C Male 58.7
Sample D Male 57.2
Periaqueductal gray
nTPM: 50.9
Samples: 3

Max nTPM: 62.2
Min nTPM: 42.1
Sample B Female 48.4
Sample C Male 62.2
Sample D Male 42.1
Substantia nigra
nTPM: 47.1
Samples: 4

Max nTPM: 60.8
Min nTPM: 33.7
Sample A Female 60.8
Sample B Female 41.5
Sample C Male 52.5
Sample D Male 33.7
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 58.9
Min nTPM: 42.8
Sample A Female 58.9
Sample B Female 42.8
Sample C Male 54.6
Sample D Male 47.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 311.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 311.1
Samples: 4

Max nTPM: 315.6
Min nTPM: 301.2
Sample A Male 301.2
Sample B Male 312.1
Sample C Female 315.5
Sample D Female 315.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
69526874 Antisense, RP_050421_01_G10, Mouse strain C57BL/6J (56 days, male) 13.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.