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ARL6IP1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:185.0 nTPM
HPA:185.0 nTPM
GTEx:142.3 nTPM
FANTOM5:209.7 Scaled Tags Per Million
Pig:47.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 185.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.2
1981 Female, age 72, midline 189.6
2194 Female, age 79, both hemispheres 185.2
2048 Male, age 55, midline 176.0
2816 Male, age 47, midline 168.6
2565 Male, age 75, midline 166.7
Cervical spinal cord, dorsal horn
nTPM: 185.0
2173 Female, age 72, unknown 203.1
2296 Male, age 66, both hemispheres 196.3
2069 Male, age 47, both hemispheres 190.6
1877 Male, age 55, unknown 174.5
2297 Male, age 75, both hemispheres 173.8
2721 Male, age 90, both hemispheres 171.7
Cervical spinal cord, ventral horn
nTPM: 176.0
2098 Female, age 72, unknown 188.5
2068 Male, age 55, unknown 176.0
2480 Male, age 75, both hemispheres 176.0
2295 Male, age 66, both hemispheres 174.8
2820 Female, age 79, both hemispheres 172.1
2809 Male, age 90, both hemispheres 168.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 142.3
Samples: 159

Max nTPM: 233.1
Min nTPM: 96.7
Std nTPM: 26.5
Median nTPM: 135.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 233.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 225.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 222.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 213.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 212.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 212.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 205.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 192.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 190.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 188.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 188.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 187.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 184.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 181.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 181.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 177.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 177.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 176.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 175.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 169.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 165.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 165.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 164.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 163.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 163.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 161.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 161.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 160.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 159.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 158.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 158.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 157.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 156.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 156.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 155.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 155.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 155.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 155.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 154.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 154.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 154.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 154.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 152.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 152.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 151.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 150.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 150.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 150.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 150.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 149.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 149.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 148.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 148.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 147.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 147.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 147.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 147.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 147.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 147.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 147.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 147.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 147.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 145.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 143.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 142.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 142.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 142.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 141.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 141.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 141.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 140.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 140.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 138.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 136.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 135.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 135.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 134.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 134.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 133.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 133.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 132.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 131.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 131.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 131.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 131.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 130.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 130.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 129.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 129.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 128.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 128.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 128.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 127.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 127.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 127.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 127.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 126.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 126.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 126.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 126.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 125.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 125.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 125.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 125.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 125.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 125.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 124.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 124.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 123.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 123.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 121.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 121.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 121.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 121.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 120.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 118.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 117.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 117.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 115.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 114.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 114.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 113.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 112.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 112.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 111.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 109.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 109.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 107.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 105.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 104.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 101.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 97.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 96.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 209.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 209.7
FF:10159-103A6 76 years, female 233.9
FF:10181-103D1 60 years, female 185.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 42.7
Samples: 4

Max nTPM: 44.9
Min nTPM: 39.9
Sample A Female 44.9
Sample B Female 42.1
Sample C Male 39.9
Sample D Male 43.8
Ventral spinal cord
nTPM: 47.9
Samples: 4

Max nTPM: 51.6
Min nTPM: 45.4
Sample A Female 48.1
Sample B Female 51.6
Sample C Male 45.4
Sample D Male 46.5

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