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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:58.6 nTPM
GTEx:94.8 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Pig:78.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 58.6
Sample id Sample description nTPM
Putamen
nTPM: 58.6
2647 Male, age 75, left hemisphere 67.3
1838 Male, age 80, right hemisphere 63.5
1937 Female, age 91, right hemisphere 60.3
2489 Female, age 72, unknown 56.6
2466 Female, age 79, unknown 56.2
1829 Male, age 74, unknown 55.3
2482 Female, age 94, left hemisphere 51.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.8
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 94.8
Samples: 205

Max nTPM: 158.0
Min nTPM: 40.8
Std nTPM: 22.2
Median nTPM: 95.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 158.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 154.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 150.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 149.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 148.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 148.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 138.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 136.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 135.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 133.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 130.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 129.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 129.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 128.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 128.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 127.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 127.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 126.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 126.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 125.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 123.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 122.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 122.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 122.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 122.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 122.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 122.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 119.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 119.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 118.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 117.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 117.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 116.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 115.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 115.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 115.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 114.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 114.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 114.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 113.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 111.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 111.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 111.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 111.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 110.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 110.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 110.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 109.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 109.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 108.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 108.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 107.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 107.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 106.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 106.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 106.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 106.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 105.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 105.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 105.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 105.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 105.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 105.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 104.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 104.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 104.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 104.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 104.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 104.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 103.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 103.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 102.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 102.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 102.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 102.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 102.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 101.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 101.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 101.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 101.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 101.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 100.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 100.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 100.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 100.4
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 100.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 99.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 98.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 98.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 98.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 97.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 97.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 97.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 97.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 96.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 96.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 96.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 96.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 96.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 95.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 95.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 95.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 95.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 94.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 94.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 94.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 92.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 92.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 91.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 91.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 91.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 91.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 90.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 90.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 90.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 89.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 89.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 89.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 89.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 89.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 89.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 89.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 88.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 86.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 86.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 86.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 86.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 85.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 85.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 84.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 84.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 83.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 83.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 83.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 83.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 83.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 83.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 82.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 82.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 82.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 82.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 82.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 81.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 81.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 81.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 81.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 81.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 81.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 81.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 80.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 80.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 80.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 79.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 78.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 78.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 78.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 77.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 77.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 76.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 76.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 76.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 75.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 75.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 75.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 75.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 75.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 74.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 74.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 74.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 73.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 72.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 71.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 71.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 71.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 71.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 71.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 71.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 71.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 70.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 70.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 70.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 69.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 68.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 68.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 68.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 68.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 67.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 67.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 65.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 65.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 64.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 64.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 63.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 61.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 61.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 59.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 59.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 57.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 57.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 56.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 52.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 50.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 45.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 43.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 40.8
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 83.9
FF:10176-103C5 60 years, female 83.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.6
Pig sample Sample description nTPM
Putamen
nTPM: 78.6
Samples: 4

Max nTPM: 94.0
Min nTPM: 58.3
Sample A Female 58.3
Sample B Female 71.9
Sample C Male 94.0
Sample D Male 90.2

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