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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:283.8 nTPM
HPA:283.8 nTPM
GTEx:218.4 nTPM
FANTOM5:713.7 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:772.7 nTPM
Allen mouse:22.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 283.8
Sample id Sample description nTPM
Amygdala
nTPM: 261.6
2814 Male, age 76, right hemisphere 289.8
2514 Male, age 75, right hemisphere 267.0
1987 Female, age 91, left hemisphere 261.3
2517 Female, age 94, left hemisphere 247.4
2695 Female, age 67, right hemisphere 242.3
Basal amygdala
nTPM: 236.1
1955 Male, age 76, both hemispheres 256.5
2110 Male, age 80, left hemisphere 255.3
2243 Female, age 91, right hemisphere 242.9
2685 Female, age 94, left hemisphere 241.7
2609 Male, age 75, right hemisphere 237.5
2827 Female, age 67, right hemisphere 183.0
Central amygdala
nTPM: 240.2
1905 Male, age 76, both hemispheres 269.5
2239 Male, age 80, left hemisphere 250.0
2515 Male, age 75, right hemisphere 242.6
2701 Female, age 91, right hemisphere 222.6
2826 Female, age 94, left hemisphere 216.0
Corticomedial amygdala
nTPM: 247.7
2240 Male, age 76, both hemispheres 272.4
2829 Male, age 80, left hemisphere 270.5
2429 Female, age 94, left hemisphere 257.9
2428 Male, age 75, right hemisphere 245.3
2242 Female, age 91, right hemisphere 242.9
2535 Female, age 67, right hemisphere 197.0
Lateral amygdala
nTPM: 231.3
1883 Male, age 76, both hemispheres 270.4
2516 Male, age 75, right hemisphere 246.4
2534 Female, age 94, left hemisphere 237.3
2256 Male, age 80, left hemisphere 229.9
2255 Female, age 91, right hemisphere 223.0
2830 Female, age 67, right hemisphere 180.8
Stria terminalis, bed nucleus
nTPM: 283.8
2486 Female, age 94, both hemispheres 316.7
1974 Female, age 91, both hemispheres 308.9
2201 Male, age 74, unknown 225.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 218.4
Samples: 152

Max nTPM: 386.2
Min nTPM: 39.3
Std nTPM: 62.1
Median nTPM: 219.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 386.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 368.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 366.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 357.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 347.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 346.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 342.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 332.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 327.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 324.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 309.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 307.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 307.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 298.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 295.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 294.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 294.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 292.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 288.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 287.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 286.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 283.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 282.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 280.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 278.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 277.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 275.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 272.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 268.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 264.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 261.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 261.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 258.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 255.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 255.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 255.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 253.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 252.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 250.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 249.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 249.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 249.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 247.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 247.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 246.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 245.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 245.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 244.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 244.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 243.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 242.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 241.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 240.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 239.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 239.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 238.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 237.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 237.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 236.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 234.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 234.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 231.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 230.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 230.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 228.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 228.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 228.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 226.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 225.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 224.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 224.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 223.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 221.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 221.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 220.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 218.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 216.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 214.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 213.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 213.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 212.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 212.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 211.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 211.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 207.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 206.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 203.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 203.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 201.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 200.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 200.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 200.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 198.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 197.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 197.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 196.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 194.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 192.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 192.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 191.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 190.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 188.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 187.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 187.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 186.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 184.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 181.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 179.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 179.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 178.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 175.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 174.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 174.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 173.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 171.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 171.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 158.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 158.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 152.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 148.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 145.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 145.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 145.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 140.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 137.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 130.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 127.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 126.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 123.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 121.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 118.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 100.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 713.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 713.7
FF:10151-102I7 76 years, female 713.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.8
Pig sample Sample description nTPM
Amygdala
nTPM: 15.8
Samples: 4

Max nTPM: 23.1
Min nTPM: 13.0
Sample A Female 23.1
Sample B Female 14.0
Sample C Male 13.0
Sample D Male 13.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 772.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 772.7
Samples: 4

Max nTPM: 828.2
Min nTPM: 738.5
Sample A Male 828.2
Sample B Male 775.7
Sample C Female 738.5
Sample D Female 748.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.7
1405 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 22.7
1406 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 15.7

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