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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:302.5 nTPM
HPA:302.5 nTPM
FANTOM5:735.5 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:777.6 nTPM
Allen mouse:17.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 302.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 247.7
2032 Female, age 42, unknown 263.3
2497 Male, age 66, unknown 242.0
2396 Male, age 61, right hemisphere 237.6
Centromedial thalamic nucleus
nTPM: 245.1
2401 Male, age 76, right hemisphere 289.7
2279 Female, age 85, left hemisphere 200.5
Habenula
nTPM: 302.5
2203 Male, age 61, left hemisphere 334.3
1957 Male, age 80, both hemispheres 330.1
2252 Male, age 62, unknown 277.6
2276 Male, age 66, unknown 268.1
Lateral geniculate body
nTPM: 264.8
2106 Female, age 67, right hemisphere 322.3
1953 Male, age 62, unknown 280.5
2399 Male, age 61, left hemisphere 278.2
2857 Male, age 74, right hemisphere 265.0
2035 Female, age 72, unknown 256.4
2575 Female, age 94, right hemisphere 245.6
2841 Male, age 80, both hemispheres 236.9
2659 Male, age 66, unknown 233.6
Lateral thalamic nuclei
nTPM: 266.6
2765 Female, age 67, both hemispheres 325.4
1903 Male, age 76, left hemisphere 275.5
2577 Male, age 74, both hemispheres 255.1
2573 Female, age 94, left hemisphere 243.1
2661 Female, age 72, unknown 233.6
Medial dorsal thalamic nucleus
nTPM: 273.0
1971 Male, age 61, right hemisphere 310.8
2498 Male, age 66, unknown 303.5
2492 Male, age 75, right hemisphere 295.3
1859 Male, age 76, both hemispheres 281.0
2402 Female, age 67, both hemispheres 279.3
2576 Male, age 74, both hemispheres 273.6
2283 Male, age 80, right hemisphere 273.1
1930 Female, age 42, unknown 268.8
1810 Male, age 48, unknown 268.0
2026 Male, age 62, unknown 266.2
2572 Female, age 94, right hemisphere 258.8
2039 Female, age 72, unknown 240.8
2660 Female, age 72, unknown 229.5
Medial geniculate body
nTPM: 250.3
1811 Female, age 42, unknown 273.3
2650 Female, age 94, left hemisphere 268.7
2657 Male, age 74, right hemisphere 262.8
2207 Male, age 80, right hemisphere 248.8
2571 Male, age 75, right hemisphere 236.4
2217 Female, age 72, unknown 235.4
2049 Male, age 76, both hemispheres 226.9
Nucleus reuniens
nTPM: 233.1
2212 Female, age 67, left hemisphere 270.3
2205 Male, age 80, left hemisphere 226.9
2210 Female, age 85, left hemisphere 201.9
Nucleus rhomboideus
nTPM: 246.0
2206 Male, age 80, both hemispheres 297.2
2213 Female, age 67, left hemisphere 250.2
2280 Female, age 85, left hemisphere 190.5
Posterior thalamic nucleus
nTPM: 258.2
2266 Male, age 76, right hemisphere 279.9
2655 Male, age 74, right hemisphere 256.9
2495 Female, age 67, right hemisphere 252.9
2649 Female, age 94, both hemispheres 243.3
Pulvinar
nTPM: 269.0
1932 Male, age 80, right hemisphere 283.3
2499 Male, age 66, unknown 281.0
2214 Male, age 76, right hemisphere 276.7
1972 Male, age 62, unknown 275.9
2724 Male, age 74, right hemisphere 271.9
2398 Male, age 61, left hemisphere 269.8
1899 Female, age 42, unknown 263.9
2496 Female, age 67, right hemisphere 260.5
1929 Male, age 48, unknown 257.2
2582 Female, age 72, unknown 250.1
Subthalamic nucleus
nTPM: 223.0
2124 Male, age 62, unknown 232.4
2275 Male, age 66, unknown 229.2
2779 Female, age 42, unknown 228.6
2658 Male, age 74, both hemispheres 221.2
2406 Female, age 72, unknown 221.0
2216 Male, age 48, unknown 220.5
2282 Male, age 61, both hemispheres 215.9
2056 Female, age 72, unknown 215.6
Ventral posterolateral thalamic nucleus
nTPM: 255.7
2197 Male, age 80, both hemispheres 288.2
2570 Male, age 75, right hemisphere 267.7
2740 Male, age 76, right hemisphere 266.3
2397 Male, age 61, right hemisphere 258.6
2578 Male, age 74, both hemispheres 238.7
2581 Female, age 72, unknown 214.7
Ventral posteromedial thalamic nucleus
nTPM: 272.4
2202 Male, age 61, left hemisphere 306.7
2281 Male, age 75, right hemisphere 273.2
2758 Male, age 80, both hemispheres 268.0
2653 Male, age 74, both hemispheres 267.1
2127 Male, age 76, right hemisphere 247.2
Ventral thalamic nuclei
nTPM: 254.6
1860 Male, age 76, both hemispheres 281.2
1845 Male, age 48, unknown 271.3
1912 Female, age 42, unknown 265.9
2652 Male, age 74, left hemisphere 259.7
2285 Male, age 62, unknown 258.3
2204 Male, age 80, both hemispheres 250.3
2580 Male, age 66, unknown 242.7
2291 Female, age 72, unknown 233.7
2858 Female, age 72, unknown 228.4
Ventromedial nucleus
nTPM: 244.3
1982 Female, age 72, unknown 260.3
1822 Female, age 42, unknown 228.2
Zona incerta
nTPM: 226.9
2215 Male, age 66, unknown 245.5
2208 Male, age 80, right hemisphere 245.3
2403 Male, age 62, unknown 217.3
2663 Female, age 72, unknown 215.9
2822 Male, age 74, right hemisphere 210.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 735.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 735.5
FF:10154-103A1 76 years, female 735.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.2
Pig sample Sample description nTPM
Thalamus
nTPM: 21.2
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.0
Sample A Female 24.8
Sample B Female 22.9
Sample C Male 19.2
Sample D Male 18.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 777.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 777.6
Samples: 4

Max nTPM: 834.3
Min nTPM: 748.5
Sample A Male 748.5
Sample B Male 834.3
Sample C Female 751.5
Sample D Female 776.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 17.7
1405 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 17.7
1406 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 11.1

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