MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:260.8 nTPM
HPA:260.8 nTPM
GTEx:156.5 nTPM
FANTOM5:666.0 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:593.5 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 260.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.4
2019 Male, age 18, unknown 257.1
1827 Male, age 72, unknown 245.7
2411 Female, age 72, unknown 242.2
2828 Female, age 72, unknown 239.0
1870 Female, age 42, unknown 238.9
2666 Male, age 74, left hemisphere 237.5
2586 Male, age 75, left hemisphere 230.2
1830 Male, age 51, unknown 222.9
1833 Male, age 53, unknown 221.1
2219 Male, age 76, both hemispheres 219.0
Dorsal raphe nucleus
nTPM: 224.7
2298 Female, age 72, unknown 245.6
2016 Female, age 72, unknown 227.7
2750 Male, age 76, both hemispheres 225.2
1828 Male, age 53, unknown 217.6
2047 Male, age 72, unknown 207.6
Inferior colliculus
nTPM: 236.0
2097 Female, age 72, unknown 262.7
1848 Female, age 42, unknown 233.7
2849 Male, age 72, unknown 224.8
1890 Male, age 53, unknown 222.9
Median raphe nucleus
nTPM: 220.5
2220 Male, age 76, midline 220.5
Pedunculopontine tegmental nucleus
nTPM: 222.5
2334 Male, age 80, both hemispheres 230.1
1921 Female, age 85, both hemispheres 227.4
2338 Male, age 61, both hemispheres 209.9
Periaquaductal grey, anterior
nTPM: 248.0
2502 Female, age 75, unknown 255.6
1795 Male, age 51, unknown 253.1
1947 Male, age 18, unknown 235.2
Periaquaductal grey, dorsal
nTPM: 231.1
1840 Male, age 53, unknown 236.6
2464 Female, age 72, unknown 236.2
2850 Male, age 76, both hemispheres 228.9
1831 Male, age 72, unknown 222.6
Periaquaductal grey, lateral
nTPM: 234.4
2272 Male, age 74, both hemispheres 248.5
2053 Male, age 18, unknown 235.2
2140 Male, age 76, both hemispheres 219.6
Pretectal area
nTPM: 260.8
1816 Male, age 51, unknown 290.7
1817 Female, age 42, unknown 286.4
2007 Male, age 72, unknown 283.1
1944 Female, age 72, unknown 282.4
1815 Male, age 53, unknown 274.8
2273 Male, age 74, both hemispheres 268.9
2667 Female, age 75, unknown 264.2
2224 Female, age 72, unknown 244.7
2407 Male, age 75, both hemispheres 229.4
2825 Male, age 18, unknown 227.7
2316 Male, age 76, right hemisphere 216.2
Red nucleus
nTPM: 227.2
2785 Male, age 18, unknown 253.2
1821 Female, age 72, unknown 244.0
1865 Male, age 51, unknown 233.0
2503 Female, age 72, unknown 230.6
1954 Female, age 42, unknown 229.7
2725 Female, age 75, unknown 227.1
2227 Male, age 72, unknown 225.9
2769 Male, age 72, unknown 225.4
1904 Male, age 53, unknown 224.7
2823 Male, age 76, right hemisphere 216.8
2588 Male, age 74, left hemisphere 208.2
2584 Male, age 75, left hemisphere 207.3
Substantia nigra
nTPM: 226.6
1889 Female, age 72, unknown 260.1
1941 Male, age 53, unknown 241.7
1851 Male, age 51, unknown 235.0
2241 Male, age 72, unknown 235.0
2409 Female, age 72, unknown 234.8
1916 Female, age 42, unknown 225.0
2583 Male, age 75, right hemisphere 222.3
2590 Female, age 75, unknown 212.1
2699 Male, age 18, unknown 205.1
2665 Male, age 74, both hemispheres 195.4
Superior colliculus
nTPM: 248.5
2261 Male, age 18, unknown 268.7
2087 Female, age 72, unknown 268.3
1796 Male, age 53, unknown 254.7
1913 Female, age 42, unknown 252.5
2668 Female, age 75, unknown 250.7
1995 Male, age 72, unknown 249.4
2664 Male, age 75, both hemispheres 244.8
2587 Male, age 74, left hemisphere 238.6
1895 Male, age 76, right hemisphere 230.8
1839 Male, age 51, unknown 226.4
Ventral tegmental area
nTPM: 228.6
2410 Female, age 72, unknown 254.4
2223 Female, age 72, unknown 238.1
2021 Male, age 53, unknown 223.0
1915 Female, age 42, unknown 222.6
2218 Male, age 76, both hemispheres 216.8
1942 Male, age 51, unknown 216.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.5
Samples: 139

Max nTPM: 346.8
Min nTPM: 68.1
Std nTPM: 45.3
Median nTPM: 148.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 346.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 315.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 273.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 272.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 258.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 250.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 239.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 235.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 229.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 228.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 219.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 666.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 666.0
FF:10158-103A5 76 years, female 666.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 11.6
Sample A Female 19.9
Sample B Female 11.6
Sample C Male 26.4
Sample D Male 19.7
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 13.6
Min nTPM: 9.4
Sample B Female 10.1
Sample C Male 13.6
Sample D Male 9.4
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 20.1
Min nTPM: 12.3
Sample A Female 17.4
Sample B Female 13.2
Sample C Male 20.1
Sample D Male 12.3
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.9
Sample A Female 19.1
Sample B Female 13.9
Sample C Male 19.0
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 593.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 593.5
Samples: 4

Max nTPM: 622.2
Min nTPM: 580.1
Sample A Male 622.2
Sample B Male 585.2
Sample C Female 580.1
Sample D Female 586.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
1405 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 13.6
1406 Antisense, RP_040324_01_A01, Mouse strain C57BL/6J (56 days, male) 9.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.