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RPL38
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1493.3 nTPM
HPA:1493.3 nTPM
GTEx:1949.5 nTPM
FANTOM5:964.3 Scaled Tags Per Million
Pig:213.2 nTPM
Mouse:1145.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1493.3
Sample id Sample description nTPM
Amygdala
nTPM: 1493.3
2695 Female, age 67, right hemisphere 1614.0
2814 Male, age 76, right hemisphere 1507.9
2517 Female, age 94, left hemisphere 1462.7
2514 Male, age 75, right hemisphere 1455.0
1987 Female, age 91, left hemisphere 1427.0
Basal amygdala
nTPM: 1452.9
2827 Female, age 67, right hemisphere 1526.9
2609 Male, age 75, right hemisphere 1457.7
2685 Female, age 94, left hemisphere 1442.2
1955 Male, age 76, both hemispheres 1439.1
2243 Female, age 91, right hemisphere 1427.8
2110 Male, age 80, left hemisphere 1423.4
Central amygdala
nTPM: 1471.7
2826 Female, age 94, left hemisphere 1605.0
1905 Male, age 76, both hemispheres 1461.8
2239 Male, age 80, left hemisphere 1446.6
2515 Male, age 75, right hemisphere 1434.3
2701 Female, age 91, right hemisphere 1411.0
Corticomedial amygdala
nTPM: 1441.6
2535 Female, age 67, right hemisphere 1469.8
2429 Female, age 94, left hemisphere 1453.9
2240 Male, age 76, both hemispheres 1449.2
2829 Male, age 80, left hemisphere 1440.3
2428 Male, age 75, right hemisphere 1421.0
2242 Female, age 91, right hemisphere 1415.3
Lateral amygdala
nTPM: 1466.0
2830 Female, age 67, right hemisphere 1577.6
2534 Female, age 94, left hemisphere 1517.3
2516 Male, age 75, right hemisphere 1498.6
1883 Male, age 76, both hemispheres 1410.8
2256 Male, age 80, left hemisphere 1409.1
2255 Female, age 91, right hemisphere 1382.7
Stria terminalis, bed nucleus
nTPM: 1408.0
1974 Female, age 91, both hemispheres 1450.6
2201 Male, age 74, unknown 1399.1
2486 Female, age 94, both hemispheres 1374.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1949.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1949.5
Samples: 152

Max nTPM: 6101.6
Min nTPM: 944.2
Std nTPM: 836.1
Median nTPM: 1755.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6101.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6003.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5034.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4577.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3993.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3929.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3509.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3410.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3396.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3300.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3229.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3159.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3025.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2934.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2815.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2738.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2724.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2707.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2699.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2676.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2630.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2621.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2602.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2578.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2551.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2531.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2515.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2466.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2448.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2404.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2316.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2285.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2271.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2269.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2199.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2196.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2176.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2164.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2160.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2160.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2148.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2148.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2147.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2135.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2099.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2098.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2088.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2083.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2080.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2058.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2006.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1988.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1980.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1980.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1978.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1965.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1965.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1942.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1936.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1924.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1921.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1912.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1890.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1878.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1878.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1873.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1870.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1866.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1862.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1858.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1856.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1844.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1840.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1811.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1794.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1761.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1749.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1749.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1739.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1697.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1679.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1675.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1660.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1643.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1631.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1628.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1611.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1607.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1604.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1593.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1593.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1586.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1579.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1576.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1574.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1572.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1563.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1549.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1537.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1536.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1521.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1512.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1512.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1510.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1510.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1495.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1485.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1481.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1480.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1474.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1435.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1435.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1432.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1426.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1420.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1396.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1390.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1382.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1358.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1352.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1347.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1338.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1335.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1327.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1288.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1286.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1285.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1284.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1281.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1275.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1238.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1238.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1227.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1216.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1214.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1211.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1203.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1198.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1196.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1189.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1180.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1177.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1176.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1159.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1131.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1113.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1094.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1093.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1060.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1040.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1005.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 944.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 964.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 964.3
FF:10151-102I7 76 years, female 964.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.2
Pig sample Sample description nTPM
Amygdala
nTPM: 213.2
Samples: 4

Max nTPM: 268.9
Min nTPM: 104.8
Sample A Female 268.9
Sample B Female 260.8
Sample C Male 218.2
Sample D Male 104.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1145.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 1145.4
Samples: 4

Max nTPM: 1237.3
Min nTPM: 1057.3
Sample A Male 1057.3
Sample B Male 1149.2
Sample C Female 1237.3
Sample D Female 1137.9

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