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RPL38
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  • RPL38
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:379.7 nTPM
GTEx:379.7 nTPM
FANTOM5:407.4 Scaled Tags Per Million
Pig:77.5 nTPM
Mouse:1050.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 379.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 379.7
Samples: 105

Max nTPM: 728.5
Min nTPM: 232.0
Std nTPM: 79.2
Median nTPM:
353_1 82 years, female 728.5
218_1 71 years, female 618.7
452_1 88 years, female 578.0
321_1 62 years, female 531.9
319_1 81 years, male 523.3
320_1 89 years, female 514.6
35_1 74 years, female 508.9
351_1 91 years, male 504.5
354_1 81 years, female 499.0
173_1 67 years, male 473.1
377_1 82 years, female 469.5
386_1 76 years, male 468.0
355_1 70 years, female 467.3
349_1 83 years, male 460.3
356_1 87 years, female 459.4
352_1 62 years, male 454.7
4_1 88 years, female 453.8
295_1 61 years, female 453.1
350_1 84 years, female 451.6
506_1 65 years, male 441.5
379_1 60 years, male 434.2
375_1 74 years, female 433.6
172_1 72 years, female 420.8
376_1 75 years, female 420.7
384_1 83 years, male 419.7
322_1 76 years, male 419.3
394_1 75 years, female 419.2
447_1 81 years, male 419.2
503_1 68 years, male 416.3
17_1 71 years, male 413.3
153_1 70 years, female 412.7
243_1 75 years, male 408.3
347_1 72 years, male 403.1
145_1 84 years, male 398.9
120_1 70 years, female 397.8
414_1 84 years, female 397.3
491_1 89 years, female 397.0
41_1 94 years, female 392.4
237_1 82 years, male 392.2
177_1 74 years, male 391.8
389_1 86 years, female 391.4
413_1 59 years, female 386.1
335_1 73 years, female 384.5
42_1 85 years, male 381.6
99_1 64 years, male 379.3
189_1 76 years, male 378.9
293_1 68 years, female 375.4
2_1 77 years, female 374.5
126_1 63 years, male 374.0
291_1 76 years, male 373.5
286_1 68 years, female 373.3
163_1 78 years, male 373.1
396_1 62 years, male 370.1
246_1 77 years, male 370.0
6_1 73 years, female 368.2
115_1 83 years, male 365.2
501_1 88 years, male 364.1
415_1 77 years, female 362.0
307_1 66 years, female 359.5
119_1 70 years, female 358.8
142_1 61 years, female 357.9
311_1 78 years, male 356.1
490_1 67 years, female 355.3
162_1 79 years, female 354.5
495_1 57 years, female 354.5
308_1 70 years, female 354.1
315_1 62 years, female 349.6
466_1 57 years, female 347.4
292_1 71 years, male 344.0
317_1 60 years, male 341.6
480_1 63 years, male 336.4
318_1 68 years, male 336.0
526_1 61 years, male 333.3
348_1 84 years, male 331.4
109_1 81 years, female 330.5
313_1 79 years, female 329.7
137_1 83 years, male 329.5
316_1 62 years, male 323.9
499_1 55 years, female 323.4
406_1 79 years, male 323.1
405_1 91 years, male 322.2
89_1 63 years, male 320.6
265_1 87 years, male 319.9
139_1 64 years, female 317.9
404_1 82 years, female 314.9
18_1 88 years, male 314.5
251_1 78 years, male 310.9
266_1 85 years, male 309.7
217_1 76 years, male 308.9
468_1 89 years, male 308.1
254_1 77 years, female 307.9
518_1 75 years, female 307.3
517_1 88 years, male 306.6
229_1 69 years, female 296.3
264_1 73 years, female 295.2
324_1 76 years, male 294.3
117_1 61 years, male 286.2
314_1 67 years, male 283.1
288_1 66 years, female 281.9
32_1 67 years, male 270.3
81_1 67 years, male 269.5
9_1 66 years, female 256.2
425_1 59 years, female 256.2
43_1 64 years, female 236.4
149_1 88 years, male 232.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 407.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 407.4
FF:10030-101E3 24-65 years, mixed 407.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.5
Pig sample Sample description nTPM
Retina
nTPM: 77.5
Samples: 4

Max nTPM: 88.0
Min nTPM: 65.0
Sample A Female 74.2
Sample B Female 82.9
Sample C Male 88.0
Sample D Male 65.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1050.8
Mouse sample Sample description nTPM
Retina
nTPM: 1050.8
Samples: 4

Max nTPM: 1298.0
Min nTPM: 849.3
Sample A Male 1068.7
Sample B Male 849.3
Sample C Female 1298.0
Sample D Female 987.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.