MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1487.5 nTPM
HPA:1487.5 nTPM
GTEx:1774.7 nTPM
FANTOM5:1135.2 Scaled Tags Per Million
Pig:343.3 nTPM
Mouse:874.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1487.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1442.5
1870 Female, age 42, unknown 1470.4
2666 Male, age 74, left hemisphere 1469.8
1830 Male, age 51, unknown 1446.9
2019 Male, age 18, unknown 1445.8
1833 Male, age 53, unknown 1445.4
2411 Female, age 72, unknown 1438.8
2586 Male, age 75, left hemisphere 1433.3
2828 Female, age 72, unknown 1431.1
2219 Male, age 76, both hemispheres 1426.9
1827 Male, age 72, unknown 1416.7
Dorsal raphe nucleus
nTPM: 1419.6
2750 Male, age 76, both hemispheres 1477.1
2016 Female, age 72, unknown 1419.2
1828 Male, age 53, unknown 1404.7
2047 Male, age 72, unknown 1400.4
2298 Female, age 72, unknown 1396.6
Inferior colliculus
nTPM: 1433.1
2849 Male, age 72, unknown 1461.8
1848 Female, age 42, unknown 1434.2
1890 Male, age 53, unknown 1432.2
2097 Female, age 72, unknown 1404.1
Median raphe nucleus
nTPM: 1456.7
2220 Male, age 76, midline 1456.7
Pedunculopontine tegmental nucleus
nTPM: 1487.5
2338 Male, age 61, both hemispheres 1534.9
2334 Male, age 80, both hemispheres 1495.5
1921 Female, age 85, both hemispheres 1432.2
Periaquaductal grey, anterior
nTPM: 1418.5
2502 Female, age 75, unknown 1434.4
1947 Male, age 18, unknown 1416.7
1795 Male, age 51, unknown 1404.5
Periaquaductal grey, dorsal
nTPM: 1410.6
2850 Male, age 76, both hemispheres 1430.6
1840 Male, age 53, unknown 1423.5
1831 Male, age 72, unknown 1397.2
2464 Female, age 72, unknown 1391.3
Periaquaductal grey, lateral
nTPM: 1392.2
2053 Male, age 18, unknown 1400.5
2140 Male, age 76, both hemispheres 1399.4
2272 Male, age 74, both hemispheres 1376.8
Pretectal area
nTPM: 1425.2
1944 Female, age 72, unknown 1454.2
1817 Female, age 42, unknown 1451.5
2007 Male, age 72, unknown 1446.2
1815 Male, age 53, unknown 1441.9
2667 Female, age 75, unknown 1433.4
1816 Male, age 51, unknown 1431.1
2224 Female, age 72, unknown 1423.6
2825 Male, age 18, unknown 1419.6
2316 Male, age 76, right hemisphere 1412.9
2407 Male, age 75, both hemispheres 1400.9
2273 Male, age 74, both hemispheres 1362.1
Red nucleus
nTPM: 1479.7
2503 Female, age 72, unknown 1542.5
1865 Male, age 51, unknown 1516.0
1904 Male, age 53, unknown 1488.8
2769 Male, age 72, unknown 1476.3
2227 Male, age 72, unknown 1473.7
2725 Female, age 75, unknown 1472.4
1821 Female, age 72, unknown 1472.1
2588 Male, age 74, left hemisphere 1471.1
2584 Male, age 75, left hemisphere 1470.5
2785 Male, age 18, unknown 1464.4
1954 Female, age 42, unknown 1462.6
2823 Male, age 76, right hemisphere 1446.4
Substantia nigra
nTPM: 1465.1
2699 Male, age 18, unknown 1500.4
2665 Male, age 74, both hemispheres 1496.3
2409 Female, age 72, unknown 1492.6
1916 Female, age 42, unknown 1483.8
1851 Male, age 51, unknown 1483.4
1889 Female, age 72, unknown 1462.5
2241 Male, age 72, unknown 1456.3
1941 Male, age 53, unknown 1434.2
2590 Female, age 75, unknown 1423.5
2583 Male, age 75, right hemisphere 1418.3
Superior colliculus
nTPM: 1440.5
2587 Male, age 74, left hemisphere 1490.1
1913 Female, age 42, unknown 1477.0
1796 Male, age 53, unknown 1475.0
1995 Male, age 72, unknown 1460.9
2668 Female, age 75, unknown 1454.6
1895 Male, age 76, right hemisphere 1422.5
1839 Male, age 51, unknown 1412.0
2261 Male, age 18, unknown 1412.0
2087 Female, age 72, unknown 1408.7
2664 Male, age 75, both hemispheres 1392.3
Ventral tegmental area
nTPM: 1460.0
2223 Female, age 72, unknown 1530.5
1915 Female, age 42, unknown 1490.7
2218 Male, age 76, both hemispheres 1449.0
1942 Male, age 51, unknown 1440.1
2410 Female, age 72, unknown 1430.9
2021 Male, age 53, unknown 1418.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1774.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1774.7
Samples: 139

Max nTPM: 6891.7
Min nTPM: 722.0
Std nTPM: 783.4
Median nTPM: 1614.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6891.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5204.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4535.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3190.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3132.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3055.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3049.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3019.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3010.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2840.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2836.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1135.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1135.2
FF:10158-103A5 76 years, female 1135.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 343.3
Pig sample Sample description nTPM
Midbrain
nTPM: 343.3
Samples: 4

Max nTPM: 588.6
Min nTPM: 179.2
Sample A Female 588.6
Sample B Female 355.1
Sample C Male 250.1
Sample D Male 179.2
Periaqueductal gray
nTPM: 235.8
Samples: 3

Max nTPM: 263.2
Min nTPM: 209.2
Sample B Female 263.2
Sample C Male 234.9
Sample D Male 209.2
Substantia nigra
nTPM: 330.4
Samples: 4

Max nTPM: 472.4
Min nTPM: 248.9
Sample A Female 472.4
Sample B Female 330.4
Sample C Male 248.9
Sample D Male 269.9
Superior colliculi
nTPM: 323.1
Samples: 4

Max nTPM: 425.8
Min nTPM: 258.5
Sample A Female 425.8
Sample B Female 305.6
Sample C Male 302.3
Sample D Male 258.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 874.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 874.4
Samples: 4

Max nTPM: 1046.7
Min nTPM: 774.6
Sample A Male 1046.7
Sample B Male 808.7
Sample C Female 774.6
Sample D Female 867.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.