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TRMT112
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.4 nTPM
HPA:158.4 nTPM
GTEx:147.4 nTPM
FANTOM5:68.8 Scaled Tags Per Million
Pig:48.5 nTPM
Mouse:34.9 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 158.4
Sample id Sample description nTPM
Amygdala
nTPM: 158.4
2695 Female, age 67, right hemisphere 160.9
2814 Male, age 76, right hemisphere 160.6
2514 Male, age 75, right hemisphere 159.9
1987 Female, age 91, left hemisphere 158.2
2517 Female, age 94, left hemisphere 152.7
Basal amygdala
nTPM: 151.9
2609 Male, age 75, right hemisphere 156.2
1955 Male, age 76, both hemispheres 154.8
2110 Male, age 80, left hemisphere 153.6
2685 Female, age 94, left hemisphere 149.3
2827 Female, age 67, right hemisphere 149.2
2243 Female, age 91, right hemisphere 148.6
Central amygdala
nTPM: 154.9
2826 Female, age 94, left hemisphere 161.0
1905 Male, age 76, both hemispheres 155.0
2239 Male, age 80, left hemisphere 153.2
2701 Female, age 91, right hemisphere 153.1
2515 Male, age 75, right hemisphere 152.0
Corticomedial amygdala
nTPM: 149.8
2428 Male, age 75, right hemisphere 153.6
2829 Male, age 80, left hemisphere 152.1
2429 Female, age 94, left hemisphere 149.5
2240 Male, age 76, both hemispheres 148.7
2535 Female, age 67, right hemisphere 148.0
2242 Female, age 91, right hemisphere 146.6
Lateral amygdala
nTPM: 154.0
2516 Male, age 75, right hemisphere 157.7
1883 Male, age 76, both hemispheres 157.1
2534 Female, age 94, left hemisphere 156.4
2830 Female, age 67, right hemisphere 154.5
2256 Male, age 80, left hemisphere 149.3
2255 Female, age 91, right hemisphere 149.0
Stria terminalis, bed nucleus
nTPM: 157.3
1974 Female, age 91, both hemispheres 165.1
2201 Male, age 74, unknown 155.3
2486 Female, age 94, both hemispheres 151.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 147.4
Samples: 152

Max nTPM: 368.3
Min nTPM: 45.5
Std nTPM: 37.4
Median nTPM: 142.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 368.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 263.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 262.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 247.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 239.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 233.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 232.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 217.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 215.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 205.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 199.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 197.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 192.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 184.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 183.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 181.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 180.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 179.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 177.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 176.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 173.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 173.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 173.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 172.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 169.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 164.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 164.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 162.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 161.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 160.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 157.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 156.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 155.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 153.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 153.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 153.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 153.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 153.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 153.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 151.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 150.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 149.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 148.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 148.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 148.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 147.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 147.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 147.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 145.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 143.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 142.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 141.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 141.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 140.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 138.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 138.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 137.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 137.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 136.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 135.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 134.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 133.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 132.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 132.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 132.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 131.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 131.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 130.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 130.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 129.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 129.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 128.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 128.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 128.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 125.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 124.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 122.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 121.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 121.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 121.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 120.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 120.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 119.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 117.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 117.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 117.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 116.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 111.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 108.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 107.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 105.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 103.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 103.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 94.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 82.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 45.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 68.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.8
FF:10151-102I7 76 years, female 68.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.5
Pig sample Sample description nTPM
Amygdala
nTPM: 48.5
Samples: 4

Max nTPM: 69.9
Min nTPM: 32.6
Sample A Female 69.9
Sample B Female 53.2
Sample C Male 38.3
Sample D Male 32.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 34.9
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.3
Sample A Male 38.3
Sample B Male 34.1
Sample C Female 36.0
Sample D Female 31.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
71654121 Antisense, RP_050927_03_D04, Mouse strain C57BL/6J (56 days, male) 1.1

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