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TRMT112
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:170.3 nTPM
HPA:170.3 nTPM
FANTOM5:99.6 Scaled Tags Per Million
Pig:87.2 nTPM
Allen mouse:1.2 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 170.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 156.3
2188 Female, age 91, both hemispheres 161.5
2090 Male, age 80, both hemispheres 157.0
2301 Female, age 85, both hemispheres 154.4
1984 Male, age 76, both hemispheres 152.2
Dorsal cochlear nucleus
nTPM: 157.7
2187 Female, age 91, both hemispheres 160.8
2802 Male, age 74, right hemisphere 160.6
2370 Male, age 61, both hemispheres 158.4
2058 Male, age 76, both hemispheres 155.3
2378 Male, age 80, both hemispheres 153.2
Dorsal tegmental nucleus
nTPM: 162.6
2358 Male, age 61, both hemispheres 167.5
2083 Male, age 80, both hemispheres 166.1
2326 Male, age 74, both hemispheres 160.3
1936 Male, age 76, left hemisphere 156.6
Dorsolateral tegmental area
nTPM: 161.5
2337 Male, age 61, both hemispheres 167.4
2654 Male, age 80, both hemispheres 165.0
2360 Male, age 74, both hemispheres 159.4
2751 Female, age 85, both hemispheres 158.6
2141 Male, age 76, both hemispheres 157.1
Kolliker-Fuse nucleus
nTPM: 166.7
2163 Male, age 80, both hemispheres 167.2
2315 Male, age 76, right hemisphere 166.7
2793 Female, age 91, left hemisphere 166.1
Lateral lemniscal nuclei
nTPM: 162.5
2036 Male, age 80, both hemispheres 169.2
2169 Male, age 76, both hemispheres 165.7
2746 Female, age 85, left hemisphere 165.1
2453 Male, age 74, right hemisphere 159.5
2320 Female, age 91, left hemisphere 153.0
Lateral parabrachial nucleus
nTPM: 165.2
2139 Female, age 85, right hemisphere 170.9
2792 Male, age 76, both hemispheres 165.9
2013 Male, age 80, both hemispheres 163.2
2790 Male, age 61, both hemispheres 160.7
Lateral vestibular nucleus
nTPM: 160.8
2184 Male, age 76, both hemispheres 161.0
2311 Male, age 80, both hemispheres 160.6
Locus coeruleus
nTPM: 170.3
2123 Female, age 91, both hemispheres 183.3
2014 Male, age 55, unknown 177.3
1980 Male, age 76, both hemispheres 172.5
2317 Female, age 72, unknown 166.9
2720 Male, age 74, both hemispheres 166.1
2788 Male, age 74, unknown 163.7
2162 Male, age 80, both hemispheres 162.1
Medial olivary nucleus
nTPM: 160.3
2851 Male, age 80, both hemispheres 161.8
1943 Male, age 61, both hemispheres 160.4
1962 Male, age 76, both hemispheres 160.2
2138 Female, age 91, both hemispheres 158.9
Medial parabrachial nucleus
nTPM: 160.6
2170 Female, age 91, both hemispheres 169.0
2854 Male, age 80, both hemispheres 164.0
2156 Male, age 61, both hemispheres 159.7
2786 Male, age 76, both hemispheres 155.4
2463 Female, age 85, right hemisphere 154.8
Medial periolivary nuclei
nTPM: 161.8
2171 Female, age 85, both hemispheres 168.0
2063 Male, age 76, both hemispheres 165.0
2791 Male, age 74, right hemisphere 163.9
2081 Male, age 80, both hemispheres 157.9
2458 Female, age 91, both hemispheres 154.0
Motor facial nucleus
nTPM: 162.2
2062 Male, age 76, both hemispheres 168.7
2697 Female, age 85, both hemispheres 165.5
2365 Male, age 74, right hemisphere 163.2
2126 Male, age 61, both hemispheres 160.3
2795 Female, age 91, both hemispheres 159.6
2327 Male, age 80, both hemispheres 156.0
Motor trigeminal nucleus
nTPM: 158.5
2079 Male, age 80, both hemispheres 162.0
2560 Male, age 74, both hemispheres 161.8
2335 Male, age 61, both hemispheres 158.5
2309 Male, age 76, both hemispheres 156.7
2321 Female, age 91, both hemispheres 153.7
Nuclei of the trapezoid body
nTPM: 162.2
1983 Male, age 76, both hemispheres 171.7
2735 Female, age 85, both hemispheres 169.0
2159 Male, age 61, both hemispheres 163.0
2166 Male, age 80, both hemispheres 156.3
2368 Female, age 91, both hemispheres 151.0
Paramedian reticular nucleus
nTPM: 164.9
2050 Female, age 85, both hemispheres 171.5
2313 Male, age 61, both hemispheres 165.2
2057 Male, age 80, both hemispheres 164.3
2052 Male, age 76, both hemispheres 158.8
Pontine nuclei
nTPM: 168.3
1863 Male, age 55, unknown 180.7
2787 Female, age 85, both hemispheres 180.0
2727 Male, age 61, right hemisphere 170.2
2109 Female, age 72, unknown 169.8
2454 Male, age 74, left hemisphere 165.2
1968 Male, age 76, left hemisphere 165.0
2115 Male, age 80, left hemisphere 157.8
2319 Female, age 91, both hemispheres 157.8
Pontine raphe nucleus
nTPM: 164.6
2122 Female, age 85, midline 166.7
2853 Male, age 76, midline 162.6
Posteroventral cochlear nucleus
nTPM: 160.3
2752 Female, age 85, both hemispheres 164.0
2135 Female, age 91, both hemispheres 162.3
2070 Male, age 76, both hemispheres 161.6
2341 Male, age 80, both hemispheres 157.0
2371 Male, age 61, both hemispheres 156.6
Principal sensory trigeminal nucleus
nTPM: 163.4
2158 Male, age 61, both hemispheres 168.8
2008 Male, age 80, left hemisphere 165.2
2324 Male, age 76, both hemispheres 161.0
2367 Female, age 91, left hemisphere 158.7
Reticular pontine nucleus, caudal
nTPM: 160.8
2092 Male, age 76, both hemispheres 164.9
2559 Male, age 74, both hemispheres 162.7
2332 Male, age 80, right hemisphere 159.6
2457 Female, age 91, both hemispheres 156.1
Reticular pontine nucleus, oral
nTPM: 162.2
1939 Male, age 80, both hemispheres 164.6
2012 Female, age 85, both hemispheres 163.8
2366 Female, age 91, both hemispheres 162.4
2361 Male, age 74, both hemispheres 160.9
2167 Male, age 76, both hemispheres 159.2
Reticulotegmental nucleus
nTPM: 158.4
2325 Male, age 76, both hemispheres 161.2
2452 Male, age 74, both hemispheres 158.6
2322 Female, age 91, both hemispheres 157.0
2333 Male, age 80, both hemispheres 156.8
Spinal trigeminal nucleus, oral
nTPM: 159.2
2164 Male, age 80, both hemispheres 162.3
2737 Female, age 85, both hemispheres 159.3
1978 Male, age 76, both hemispheres 155.9
Subcoeruleus area
nTPM: 161.1
1958 Male, age 80, both hemispheres 166.5
2323 Female, age 91, left hemisphere 164.6
2451 Male, age 74, both hemispheres 161.1
2369 Female, age 85, left hemisphere 156.8
2089 Male, age 76, left hemisphere 156.7
Superior olive
nTPM: 163.5
1875 Female, age 85, both hemispheres 173.8
2364 Male, age 74, right hemisphere 167.6
2020 Male, age 76, both hemispheres 163.7
2329 Male, age 80, right hemisphere 157.9
2561 Female, age 91, both hemispheres 154.5
Superior vestibular nucleus
nTPM: 163.2
2383 Male, age 74, both hemispheres 166.9
2015 Male, age 80, both hemispheres 164.0
2061 Male, age 76, both hemispheres 158.8
Ventral periolivary nuclei
nTPM: 162.0
2130 Female, age 85, both hemispheres 165.8
2023 Male, age 76, both hemispheres 165.0
2165 Male, age 80, both hemispheres 163.0
2794 Female, age 91, left hemisphere 154.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 161.0
2840 Female, age 85, both hemispheres 165.9
1959 Male, age 76, both hemispheres 163.6
2359 Male, age 61, both hemispheres 163.0
2449 Male, age 74, both hemispheres 162.4
2161 Male, age 80, both hemispheres 159.9
2456 Female, age 91, both hemispheres 151.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 99.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 93.7
FF:10165-103B3 76 years, female 100.6
FF:10182-103D2 60 years, female 86.7
Pons
Scaled Tags Per Million: 99.6
FF:10033-101E6 18-54 years, mixed 99.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 87.2
Pig sample Sample description nTPM
Pons
nTPM: 87.2
Samples: 4

Max nTPM: 101.4
Min nTPM: 72.9
Sample A Female 89.1
Sample B Female 72.9
Sample C Male 101.4
Sample D Male 85.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.2
71654121 Antisense, RP_050927_03_D04, Mouse strain C57BL/6J (56 days, male) 1.2

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by the Knut & Alice Wallenberg Foundation.