MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:169.2 nTPM
HPA:169.2 nTPM
GTEx:153.7 nTPM
FANTOM5:107.6 Scaled Tags Per Million
Pig:85.1 nTPM
Mouse:34.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.8
1870 Female, age 42, unknown 162.6
2411 Female, age 72, unknown 162.5
1827 Male, age 72, unknown 160.7
1833 Male, age 53, unknown 158.6
2828 Female, age 72, unknown 158.5
1830 Male, age 51, unknown 157.3
2666 Male, age 74, left hemisphere 157.2
2219 Male, age 76, both hemispheres 153.4
2586 Male, age 75, left hemisphere 149.5
2019 Male, age 18, unknown 147.5
Dorsal raphe nucleus
nTPM: 162.3
2047 Male, age 72, unknown 168.9
2298 Female, age 72, unknown 167.5
1828 Male, age 53, unknown 160.0
2750 Male, age 76, both hemispheres 159.4
2016 Female, age 72, unknown 155.5
Inferior colliculus
nTPM: 156.4
1848 Female, age 42, unknown 157.7
2097 Female, age 72, unknown 156.5
2849 Male, age 72, unknown 156.1
1890 Male, age 53, unknown 155.2
Median raphe nucleus
nTPM: 169.2
2220 Male, age 76, midline 169.2
Pedunculopontine tegmental nucleus
nTPM: 163.8
2334 Male, age 80, both hemispheres 169.4
2338 Male, age 61, both hemispheres 162.4
1921 Female, age 85, both hemispheres 159.5
Periaquaductal grey, anterior
nTPM: 161.6
1947 Male, age 18, unknown 166.9
1795 Male, age 51, unknown 159.0
2502 Female, age 75, unknown 159.0
Periaquaductal grey, dorsal
nTPM: 157.9
2850 Male, age 76, both hemispheres 164.7
1840 Male, age 53, unknown 160.6
1831 Male, age 72, unknown 154.5
2464 Female, age 72, unknown 151.8
Periaquaductal grey, lateral
nTPM: 160.7
2053 Male, age 18, unknown 161.4
2140 Male, age 76, both hemispheres 160.6
2272 Male, age 74, both hemispheres 160.2
Pretectal area
nTPM: 157.4
2825 Male, age 18, unknown 164.7
2224 Female, age 72, unknown 163.4
1817 Female, age 42, unknown 158.3
2273 Male, age 74, both hemispheres 158.1
2007 Male, age 72, unknown 157.5
2667 Female, age 75, unknown 157.4
1944 Female, age 72, unknown 157.0
1816 Male, age 51, unknown 155.6
2316 Male, age 76, right hemisphere 154.6
1815 Male, age 53, unknown 154.2
2407 Male, age 75, both hemispheres 150.9
Red nucleus
nTPM: 155.6
1821 Female, age 72, unknown 160.9
2725 Female, age 75, unknown 159.6
1954 Female, age 42, unknown 157.3
1865 Male, age 51, unknown 156.2
2503 Female, age 72, unknown 156.1
2769 Male, age 72, unknown 155.6
2588 Male, age 74, left hemisphere 155.2
2227 Male, age 72, unknown 155.0
1904 Male, age 53, unknown 153.9
2823 Male, age 76, right hemisphere 153.4
2584 Male, age 75, left hemisphere 151.9
2785 Male, age 18, unknown 151.7
Substantia nigra
nTPM: 162.1
1916 Female, age 42, unknown 169.1
2409 Female, age 72, unknown 167.0
2699 Male, age 18, unknown 165.1
1851 Male, age 51, unknown 164.7
1941 Male, age 53, unknown 163.3
1889 Female, age 72, unknown 163.2
2665 Male, age 74, both hemispheres 160.4
2241 Male, age 72, unknown 157.4
2590 Female, age 75, unknown 155.7
2583 Male, age 75, right hemisphere 154.9
Superior colliculus
nTPM: 155.4
2668 Female, age 75, unknown 159.1
2587 Male, age 74, left hemisphere 157.9
1796 Male, age 53, unknown 157.8
1913 Female, age 42, unknown 156.0
1895 Male, age 76, right hemisphere 155.7
2261 Male, age 18, unknown 155.7
1839 Male, age 51, unknown 155.4
1995 Male, age 72, unknown 153.3
2087 Female, age 72, unknown 152.6
2664 Male, age 75, both hemispheres 150.4
Ventral tegmental area
nTPM: 160.5
1915 Female, age 42, unknown 164.5
2410 Female, age 72, unknown 164.3
1942 Male, age 51, unknown 159.9
2218 Male, age 76, both hemispheres 159.1
2021 Male, age 53, unknown 158.9
2223 Female, age 72, unknown 156.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 153.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.7
Samples: 139

Max nTPM: 256.9
Min nTPM: 88.2
Std nTPM: 33.1
Median nTPM: 148.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 256.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 251.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 243.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 240.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 227.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 222.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 218.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 211.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 210.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 205.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 202.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.6
FF:10158-103A5 76 years, female 107.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.1
Pig sample Sample description nTPM
Midbrain
nTPM: 73.8
Samples: 4

Max nTPM: 98.5
Min nTPM: 55.4
Sample A Female 98.5
Sample B Female 76.4
Sample C Male 55.4
Sample D Male 65.0
Periaqueductal gray
nTPM: 67.1
Samples: 3

Max nTPM: 77.5
Min nTPM: 61.2
Sample B Female 61.2
Sample C Male 77.5
Sample D Male 62.6
Substantia nigra
nTPM: 78.4
Samples: 4

Max nTPM: 115.4
Min nTPM: 44.1
Sample A Female 115.4
Sample B Female 81.6
Sample C Male 72.4
Sample D Male 44.1
Superior colliculi
nTPM: 85.1
Samples: 4

Max nTPM: 114.6
Min nTPM: 57.0
Sample A Female 114.6
Sample B Female 105.6
Sample C Male 57.0
Sample D Male 63.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 29.0
Sample A Male 38.7
Sample B Male 32.4
Sample C Female 29.0
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71654121 Antisense, RP_050927_03_D04, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.