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NPM1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:180.7 nTPM
HPA:180.7 nTPM
GTEx:240.8 nTPM
FANTOM5:109.5 Scaled Tags Per Million
Pig:32.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 180.7
Sample id Sample description nTPM
Amygdala
nTPM: 180.7
2695 Female, age 67, right hemisphere 194.6
2814 Male, age 76, right hemisphere 185.4
2514 Male, age 75, right hemisphere 182.3
1987 Female, age 91, left hemisphere 175.9
2517 Female, age 94, left hemisphere 165.4
Basal amygdala
nTPM: 163.1
2827 Female, age 67, right hemisphere 177.8
2609 Male, age 75, right hemisphere 164.7
2110 Male, age 80, left hemisphere 162.7
1955 Male, age 76, both hemispheres 162.2
2685 Female, age 94, left hemisphere 157.5
2243 Female, age 91, right hemisphere 153.7
Central amygdala
nTPM: 173.4
2826 Female, age 94, left hemisphere 204.8
2515 Male, age 75, right hemisphere 173.0
1905 Male, age 76, both hemispheres 167.4
2239 Male, age 80, left hemisphere 162.8
2701 Female, age 91, right hemisphere 159.3
Corticomedial amygdala
nTPM: 161.7
2240 Male, age 76, both hemispheres 172.0
2829 Male, age 80, left hemisphere 167.1
2428 Male, age 75, right hemisphere 163.0
2535 Female, age 67, right hemisphere 161.5
2242 Female, age 91, right hemisphere 158.0
2429 Female, age 94, left hemisphere 148.9
Lateral amygdala
nTPM: 171.8
2830 Female, age 67, right hemisphere 197.8
2516 Male, age 75, right hemisphere 177.6
2534 Female, age 94, left hemisphere 171.3
1883 Male, age 76, both hemispheres 170.6
2256 Male, age 80, left hemisphere 163.0
2255 Female, age 91, right hemisphere 150.5
Stria terminalis, bed nucleus
nTPM: 162.1
2201 Male, age 74, unknown 170.7
1974 Female, age 91, both hemispheres 169.0
2486 Female, age 94, both hemispheres 146.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 240.8
Samples: 152

Max nTPM: 782.4
Min nTPM: 158.0
Std nTPM: 69.2
Median nTPM: 223.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 782.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 498.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 402.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 398.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 388.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 381.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 365.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 364.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 353.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 343.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 339.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 322.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 320.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 318.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 307.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 303.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 303.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 301.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 299.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 299.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 297.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 295.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 295.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 293.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 286.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 283.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 281.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 277.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 277.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 275.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 273.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 271.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 271.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 262.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 260.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 257.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 254.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 254.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 253.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 253.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 251.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 250.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 248.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 247.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 247.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 244.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 244.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 244.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 241.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 240.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 240.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 239.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 238.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 238.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 238.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 237.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 235.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 235.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 234.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 233.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 233.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 231.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 231.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 230.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 230.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 229.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 229.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 229.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 228.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 228.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 226.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 225.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 224.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 224.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 224.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 223.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 223.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 223.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 223.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 222.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 222.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 221.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 221.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 220.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 220.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 220.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 220.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 220.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 220.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 218.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 217.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 216.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 215.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 213.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 212.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 212.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 212.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 212.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 212.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 211.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 210.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 208.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 208.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 207.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 205.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 205.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 205.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 204.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 203.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 203.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 203.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 200.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 200.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 199.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 199.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 199.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 197.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 197.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 197.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 196.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 196.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 196.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 195.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 194.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 194.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 194.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 193.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 193.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 192.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 189.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 188.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 187.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 185.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 185.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 183.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 183.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 175.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 174.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 172.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 170.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 160.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 158.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 109.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.5
FF:10151-102I7 76 years, female 109.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.9
Pig sample Sample description nTPM
Amygdala
nTPM: 32.9
Samples: 4

Max nTPM: 40.7
Min nTPM: 26.8
Sample A Female 40.7
Sample B Female 34.4
Sample C Male 29.8
Sample D Male 26.8

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