MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:188.6 nTPM
HPA:188.6 nTPM
GTEx:266.6 nTPM
FANTOM5:159.0 Scaled Tags Per Million
Pig:45.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.9
2666 Male, age 74, left hemisphere 185.4
1870 Female, age 42, unknown 183.3
1833 Male, age 53, unknown 180.7
1827 Male, age 72, unknown 177.8
2411 Female, age 72, unknown 176.3
1830 Male, age 51, unknown 176.2
2828 Female, age 72, unknown 174.1
2219 Male, age 76, both hemispheres 172.0
2019 Male, age 18, unknown 171.8
2586 Male, age 75, left hemisphere 161.4
Dorsal raphe nucleus
nTPM: 177.8
2298 Female, age 72, unknown 181.0
2016 Female, age 72, unknown 180.5
1828 Male, age 53, unknown 177.7
2750 Male, age 76, both hemispheres 177.0
2047 Male, age 72, unknown 172.6
Inferior colliculus
nTPM: 175.7
2849 Male, age 72, unknown 183.5
1848 Female, age 42, unknown 176.3
2097 Female, age 72, unknown 171.9
1890 Male, age 53, unknown 171.3
Median raphe nucleus
nTPM: 185.0
2220 Male, age 76, midline 185.0
Pedunculopontine tegmental nucleus
nTPM: 188.6
2338 Male, age 61, both hemispheres 202.3
2334 Male, age 80, both hemispheres 193.6
1921 Female, age 85, both hemispheres 169.9
Periaquaductal grey, anterior
nTPM: 174.5
2502 Female, age 75, unknown 179.6
1947 Male, age 18, unknown 172.3
1795 Male, age 51, unknown 171.4
Periaquaductal grey, dorsal
nTPM: 176.6
2850 Male, age 76, both hemispheres 187.9
1831 Male, age 72, unknown 175.7
1840 Male, age 53, unknown 175.3
2464 Female, age 72, unknown 167.5
Periaquaductal grey, lateral
nTPM: 172.8
2053 Male, age 18, unknown 175.4
2272 Male, age 74, both hemispheres 174.2
2140 Male, age 76, both hemispheres 168.7
Pretectal area
nTPM: 174.8
2825 Male, age 18, unknown 184.2
2224 Female, age 72, unknown 183.0
1817 Female, age 42, unknown 182.7
1815 Male, age 53, unknown 181.4
1816 Male, age 51, unknown 175.1
2273 Male, age 74, both hemispheres 173.6
2007 Male, age 72, unknown 172.1
2316 Male, age 76, right hemisphere 171.3
1944 Female, age 72, unknown 170.7
2667 Female, age 75, unknown 166.8
2407 Male, age 75, both hemispheres 162.2
Red nucleus
nTPM: 179.7
1821 Female, age 72, unknown 193.8
2503 Female, age 72, unknown 192.3
2725 Female, age 75, unknown 189.8
2588 Male, age 74, left hemisphere 184.3
2823 Male, age 76, right hemisphere 181.2
1865 Male, age 51, unknown 178.2
1954 Female, age 42, unknown 177.2
2227 Male, age 72, unknown 175.2
1904 Male, age 53, unknown 174.0
2769 Male, age 72, unknown 172.3
2584 Male, age 75, left hemisphere 169.3
2785 Male, age 18, unknown 168.7
Substantia nigra
nTPM: 178.9
2241 Male, age 72, unknown 189.1
2665 Male, age 74, both hemispheres 187.2
2699 Male, age 18, unknown 184.7
2590 Female, age 75, unknown 184.4
1941 Male, age 53, unknown 178.3
1889 Female, age 72, unknown 176.9
1851 Male, age 51, unknown 176.7
1916 Female, age 42, unknown 173.2
2583 Male, age 75, right hemisphere 169.7
2409 Female, age 72, unknown 168.6
Superior colliculus
nTPM: 174.1
2587 Male, age 74, left hemisphere 196.2
1839 Male, age 51, unknown 183.8
1913 Female, age 42, unknown 177.2
1895 Male, age 76, right hemisphere 174.5
1995 Male, age 72, unknown 173.4
2261 Male, age 18, unknown 172.5
1796 Male, age 53, unknown 170.0
2087 Female, age 72, unknown 167.5
2668 Female, age 75, unknown 163.2
2664 Male, age 75, both hemispheres 162.6
Ventral tegmental area
nTPM: 178.0
2223 Female, age 72, unknown 182.0
2021 Male, age 53, unknown 180.7
1915 Female, age 42, unknown 180.1
2218 Male, age 76, both hemispheres 178.1
2410 Female, age 72, unknown 174.5
1942 Male, age 51, unknown 172.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 266.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 266.6
Samples: 139

Max nTPM: 601.2
Min nTPM: 170.7
Std nTPM: 66.5
Median nTPM: 251.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 601.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 504.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 411.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 406.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 389.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 386.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 384.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 383.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 367.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 366.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 365.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 159.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 159.0
FF:10158-103A5 76 years, female 159.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.1
Pig sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 55.5
Min nTPM: 37.7
Sample A Female 55.5
Sample B Female 40.1
Sample C Male 41.1
Sample D Male 37.7
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 38.9
Min nTPM: 34.2
Sample B Female 34.7
Sample C Male 38.9
Sample D Male 34.2
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 47.5
Min nTPM: 33.0
Sample A Female 47.5
Sample B Female 38.9
Sample C Male 41.5
Sample D Male 33.0
Superior colliculi
nTPM: 45.1
Samples: 4

Max nTPM: 48.7
Min nTPM: 40.6
Sample A Female 48.7
Sample B Female 43.8
Sample C Male 47.3
Sample D Male 40.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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