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NPM1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:213.9 nTPM
HPA:213.9 nTPM
GTEx:336.1 nTPM
FANTOM5:226.3 Scaled Tags Per Million
Pig:45.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 213.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.8
2048 Male, age 55, midline 197.8
1981 Female, age 72, midline 196.0
2565 Male, age 75, midline 195.8
2816 Male, age 47, midline 173.4
2194 Female, age 79, both hemispheres 171.3
Cervical spinal cord, dorsal horn
nTPM: 190.3
2296 Male, age 66, both hemispheres 215.0
2069 Male, age 47, both hemispheres 204.2
2173 Female, age 72, unknown 202.6
1877 Male, age 55, unknown 191.0
2297 Male, age 75, both hemispheres 167.5
2721 Male, age 90, both hemispheres 161.7
Cervical spinal cord, ventral horn
nTPM: 213.9
2480 Male, age 75, both hemispheres 253.2
2809 Male, age 90, both hemispheres 241.6
2098 Female, age 72, unknown 216.9
2295 Male, age 66, both hemispheres 211.3
2068 Male, age 55, unknown 186.0
2820 Female, age 79, both hemispheres 174.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 336.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 336.1
Samples: 159

Max nTPM: 705.8
Min nTPM: 160.3
Std nTPM: 78.1
Median nTPM: 326.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 705.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 528.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 515.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 514.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 504.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 502.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 493.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 489.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 487.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 485.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 456.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 454.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 447.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 446.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 445.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 445.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 444.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 439.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 431.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 429.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 425.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 421.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 419.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 415.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 410.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 404.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 403.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 399.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 394.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 393.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 392.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 391.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 389.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 389.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 386.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 385.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 380.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 379.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 378.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 378.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 377.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 377.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 374.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 372.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 371.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 371.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 366.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 365.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 364.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 363.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 363.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 363.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 362.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 357.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 353.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 350.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 349.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 347.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 346.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 345.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 345.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 345.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 342.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 341.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 339.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 338.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 337.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 337.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 335.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 335.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 334.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 333.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 330.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 329.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 329.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 328.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 328.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 327.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 327.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 326.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 326.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 325.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 323.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 323.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 322.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 321.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 320.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 319.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 317.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 317.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 316.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 315.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 315.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 314.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 313.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 312.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 311.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 310.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 308.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 307.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 306.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 306.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 305.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 301.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 301.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 300.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 298.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 295.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 295.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 294.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 294.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 293.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 292.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 291.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 288.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 287.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 286.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 285.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 283.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 279.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 278.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 278.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 278.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 276.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 276.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 273.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 273.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 271.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 268.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 262.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 260.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 259.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 258.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 258.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 257.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 255.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 255.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 250.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 250.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 249.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 248.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 246.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 245.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 245.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 244.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 244.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 243.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 243.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 242.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 238.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 233.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 233.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 227.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 227.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 226.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 208.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 203.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 202.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 160.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 226.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 226.3
FF:10181-103D1 60 years, female 239.1
FF:10159-103A6 76 years, female 213.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 45.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 39.8
Sample A Female 39.8
Sample B Female 51.4
Sample C Male 51.7
Sample D Male 40.3
Ventral spinal cord
nTPM: 45.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 41.3
Sample A Female 41.3
Sample B Female 44.0
Sample C Male 44.9
Sample D Male 50.1

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