MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:53.5 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Mouse:20.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
2828 Female, age 72, unknown 48.1
1833 Male, age 53, unknown 46.5
1870 Female, age 42, unknown 41.0
1830 Male, age 51, unknown 40.2
1827 Male, age 72, unknown 39.3
2219 Male, age 76, both hemispheres 38.2
2586 Male, age 75, left hemisphere 36.4
2411 Female, age 72, unknown 36.3
2019 Male, age 18, unknown 34.1
2666 Male, age 74, left hemisphere 26.2
Dorsal raphe nucleus
nTPM: 51.0
2016 Female, age 72, unknown 63.6
1828 Male, age 53, unknown 54.0
2298 Female, age 72, unknown 51.8
2047 Male, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 42.5
Inferior colliculus
nTPM: 44.7
2849 Male, age 72, unknown 54.5
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 37.3
2097 Female, age 72, unknown 34.9
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Pedunculopontine tegmental nucleus
nTPM: 45.1
2338 Male, age 61, both hemispheres 48.0
2334 Male, age 80, both hemispheres 47.0
1921 Female, age 85, both hemispheres 40.3
Periaquaductal grey, anterior
nTPM: 50.9
1795 Male, age 51, unknown 59.8
2502 Female, age 75, unknown 48.8
1947 Male, age 18, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 56.2
2850 Male, age 76, both hemispheres 68.0
1840 Male, age 53, unknown 60.8
1831 Male, age 72, unknown 49.3
2464 Female, age 72, unknown 46.8
Periaquaductal grey, lateral
nTPM: 58.9
2272 Male, age 74, both hemispheres 64.7
2140 Male, age 76, both hemispheres 61.3
2053 Male, age 18, unknown 50.7
Pretectal area
nTPM: 53.4
2667 Female, age 75, unknown 73.5
2273 Male, age 74, both hemispheres 73.1
2224 Female, age 72, unknown 61.6
2316 Male, age 76, right hemisphere 54.8
1817 Female, age 42, unknown 50.6
2825 Male, age 18, unknown 48.8
1944 Female, age 72, unknown 48.4
2407 Male, age 75, both hemispheres 47.1
1816 Male, age 51, unknown 45.6
1815 Male, age 53, unknown 45.5
2007 Male, age 72, unknown 38.6
Red nucleus
nTPM: 43.1
2503 Female, age 72, unknown 52.2
2227 Male, age 72, unknown 48.7
2823 Male, age 76, right hemisphere 48.6
2725 Female, age 75, unknown 48.3
2769 Male, age 72, unknown 48.0
1954 Female, age 42, unknown 45.9
1904 Male, age 53, unknown 44.4
1865 Male, age 51, unknown 40.9
2588 Male, age 74, left hemisphere 39.1
2785 Male, age 18, unknown 38.7
1821 Female, age 72, unknown 38.0
2584 Male, age 75, left hemisphere 24.9
Substantia nigra
nTPM: 37.9
2699 Male, age 18, unknown 72.4
1889 Female, age 72, unknown 42.3
1916 Female, age 42, unknown 39.6
2409 Female, age 72, unknown 39.2
1851 Male, age 51, unknown 36.6
2583 Male, age 75, right hemisphere 35.5
2590 Female, age 75, unknown 31.6
1941 Male, age 53, unknown 29.9
2241 Male, age 72, unknown 26.9
2665 Male, age 74, both hemispheres 24.6
Superior colliculus
nTPM: 47.7
1995 Male, age 72, unknown 67.8
1895 Male, age 76, right hemisphere 54.8
1913 Female, age 42, unknown 54.5
1796 Male, age 53, unknown 48.9
2664 Male, age 75, both hemispheres 46.9
1839 Male, age 51, unknown 46.7
2087 Female, age 72, unknown 43.1
2261 Male, age 18, unknown 41.2
2587 Male, age 74, left hemisphere 38.8
2668 Female, age 75, unknown 34.5
Ventral tegmental area
nTPM: 41.4
2218 Male, age 76, both hemispheres 48.8
2021 Male, age 53, unknown 43.8
2223 Female, age 72, unknown 40.9
1915 Female, age 42, unknown 40.2
1942 Male, age 51, unknown 39.7
2410 Female, age 72, unknown 35.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.5
Samples: 139

Max nTPM: 149.6
Min nTPM: 7.1
Std nTPM: 24.2
Median nTPM: 52.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 149.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 143.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 136.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 105.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 90.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 88.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 88.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 87.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 85.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.7
FF:10158-103A5 76 years, female 125.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.2
Sample A Male 24.2
Sample B Male 20.4
Sample C Female 17.2
Sample D Female 18.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.