BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:58.5 nTPM
HPA:58.5 nTPM
GTEx:68.7 nTPM
FANTOM5:189.9 Scaled Tags Per Million
Mouse:47.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA045725Antibody CAB079745
Glial cells MediumMedium
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.8
2481 Female, age 94, left hemisphere 78.0
2288 Male, age 75, left hemisphere 66.7
2289 Male, age 61, right hemisphere 57.3
2290 Female, age 72, unknown 49.5
1857 Female, age 85, left hemisphere 46.5
1854 Male, age 80, left hemisphere 43.4
1781 Male, age 74, unknown 42.5
2846 Female, age 79, unknown 30.4
Claustrum
nTPM: 33.7
2292 Female, age 85, both hemispheres 50.2
2196 Female, age 79, unknown 35.3
2284 Female, age 91, both hemispheres 33.7
1956 Male, age 74, unknown 33.0
2198 Male, age 80, both hemispheres 33.0
2645 Female, age 72, unknown 30.7
2491 Male, age 75, both hemispheres 29.9
2392 Female, age 94, both hemispheres 29.3
2568 Male, age 61, both hemispheres 28.3
Globus pallidus, externus
nTPM: 58.5
2646 Male, age 61, right hemisphere 74.4
1996 Male, age 80, right hemisphere 73.7
2567 Female, age 72, unknown 57.6
2772 Female, age 79, unknown 51.5
2395 Male, age 75, both hemispheres 35.2
Globus pallidus, internus
nTPM: 56.5
2037 Male, age 80, right hemisphere 68.1
1818 Male, age 74, unknown 60.6
2566 Female, age 72, unknown 58.7
2483 Female, age 94, right hemisphere 57.5
2778 Female, age 91, both hemispheres 51.2
2111 Female, age 85, right hemisphere 50.3
2287 Male, age 75, right hemisphere 49.0
Nucleus accumbens
nTPM: 50.8
2286 Male, age 75, left hemisphere 67.7
2391 Female, age 94, left hemisphere 62.7
2732 Male, age 80, right hemisphere 60.4
1806 Female, age 85, left hemisphere 56.3
2698 Female, age 72, unknown 52.1
2824 Male, age 61, right hemisphere 41.1
1856 Female, age 91, right hemisphere 33.1
1783 Male, age 74, unknown 33.0
Nucleus basalis of Meynert
nTPM: 43.6
2569 Male, age 61, both hemispheres 69.5
2393 Male, age 80, right hemisphere 35.9
2484 Female, age 94, left hemisphere 35.1
2821 Male, age 75, both hemispheres 34.0
Nucleus of the diagonal band
nTPM: 42.8
1979 Male, age 74, unknown 70.1
1812 Female, age 91, both hemispheres 41.9
2195 Female, age 85, both hemispheres 41.6
2775 Male, age 80, right hemisphere 34.9
2029 Male, age 61, right hemisphere 25.6
Olfactory tubercle
nTPM: 35.8
2856 Male, age 75, right hemisphere 44.7
1846 Male, age 80, right hemisphere 40.5
2487 Female, age 94, left hemisphere 31.0
1998 Female, age 91, both hemispheres 27.1
Putamen
nTPM: 40.6
2482 Female, age 94, left hemisphere 58.5
2647 Male, age 75, left hemisphere 46.0
1838 Male, age 80, right hemisphere 41.5
2489 Female, age 72, unknown 39.7
1829 Male, age 74, unknown 39.4
1937 Female, age 91, right hemisphere 32.4
2466 Female, age 79, unknown 27.1
Septal nuclei
nTPM: 46.6
2199 Male, age 80, right hemisphere 78.7
2059 Female, age 85, both hemispheres 55.8
2009 Female, age 91, both hemispheres 44.9
2629 Female, age 94, right hemisphere 44.7
2394 Male, age 61, left hemisphere 38.6
1960 Male, age 74, unknown 33.9
2031 Female, age 72, unknown 30.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.7
Samples: 246

Max nTPM: 163.0
Min nTPM: 14.3
Std nTPM: 26.2
Median nTPM: 64.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 163.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 156.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 155.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 152.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 146.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 132.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 128.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 126.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 119.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.6
Samples: 246

Max nTPM: 200.5
Min nTPM: 24.6
Std nTPM: 24.0
Median nTPM: 61.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 200.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 157.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 149.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 129.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 123.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 119.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 119.2
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 119.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 111.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 111.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 111.0
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Brain - Putamen (basal ganglia)
Average nTPM: 58.9
Samples: 205

Max nTPM: 139.5
Min nTPM: 15.3
Std nTPM: 21.6
Median nTPM: 57.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 139.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 113.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 109.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 107.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 102.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 100.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 100.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 100.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 99.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 98.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 97.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 189.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 189.9
FF:10164-103B2 76 years, female 189.9
Globus pallidus
Scaled Tags Per Million: 117.1
FF:10161-103A8 76 years, female 139.4
FF:10175-103C4 60 years, female 94.7
Nucleus accumbens
Scaled Tags Per Million: 133.7
FF:10037-101F1 23-56 years, mixed 133.7
Putamen
Scaled Tags Per Million: 167.3
FF:10176-103C5 60 years, female 167.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 24.2
Sample A Male 26.2
Sample B Male 27.7
Sample C Female 24.2
Sample D Female 24.6
Septum
nTPM: 47.7
Samples: 4

Max nTPM: 59.8
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 59.8
Sample C Female 43.7
Sample D Female 48.2
Ventral forebrain
nTPM: 26.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 24.5
Sample A Male 27.3
Sample B Male 24.7
Sample C Female 27.3
Sample D Female 24.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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