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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
81.983
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.2 nTPM
HPA:59.2 nTPM
FANTOM5:172.8 Scaled Tags Per Million
Mouse:26.3 nTPM

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA071379
Thalamus mean intensity 81.983
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 27.610
Parafascicular thalamic nucleus -
Pregeniculate nucleus 40.453
Stria terminalis 77.520
Zona incerta 32.101
Anterodorsal thalamic nucleus 81.983
Reticular thalamic nucleus -
Vental anterior thalamic nucleus -
Medial habenular nucleus 50.111
Laterodorsal thalamic area 33.578
Paraventricular thalamic nucleus -
Central medial thalamic area -
Ventral lateral thalamic area -
Ventral medial thalamic area -
Lateral habenulal nucleus 31.445
Ventral posterior thalamus -
Anterior pretactal nucleus 24.384
Retromammillary nucleus -

THALAMUS - HPA Brain RNA-seq
Max nTPM 59.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 39.2
2497 Male, age 66, unknown 50.4
2032 Female, age 42, unknown 43.6
2396 Male, age 61, right hemisphere 23.6
Centromedial thalamic nucleus
nTPM: 54.9
2279 Female, age 85, left hemisphere 61.4
2401 Male, age 76, right hemisphere 48.3
Habenula
nTPM: 59.2
2203 Male, age 61, left hemisphere 74.0
1957 Male, age 80, both hemispheres 59.7
2276 Male, age 66, unknown 57.1
2252 Male, age 62, unknown 46.2
Lateral geniculate body
nTPM: 50.3
2399 Male, age 61, left hemisphere 72.8
2659 Male, age 66, unknown 56.9
2575 Female, age 94, right hemisphere 53.8
2841 Male, age 80, both hemispheres 51.7
2035 Female, age 72, unknown 47.7
2857 Male, age 74, right hemisphere 45.0
1953 Male, age 62, unknown 40.8
2106 Female, age 67, right hemisphere 33.9
Lateral thalamic nuclei
nTPM: 49.8
2573 Female, age 94, left hemisphere 65.9
1903 Male, age 76, left hemisphere 53.7
2661 Female, age 72, unknown 48.7
2765 Female, age 67, both hemispheres 46.0
2577 Male, age 74, both hemispheres 34.7
Medial dorsal thalamic nucleus
nTPM: 49.7
2039 Female, age 72, unknown 59.7
1810 Male, age 48, unknown 58.3
2283 Male, age 80, right hemisphere 56.6
2660 Female, age 72, unknown 53.9
1859 Male, age 76, both hemispheres 52.7
2492 Male, age 75, right hemisphere 51.6
2498 Male, age 66, unknown 50.5
2026 Male, age 62, unknown 49.2
2402 Female, age 67, both hemispheres 48.0
1971 Male, age 61, right hemisphere 47.2
1930 Female, age 42, unknown 40.5
2572 Female, age 94, right hemisphere 39.3
2576 Male, age 74, both hemispheres 39.1
Medial geniculate body
nTPM: 48.8
2650 Female, age 94, left hemisphere 59.2
2207 Male, age 80, right hemisphere 56.1
2217 Female, age 72, unknown 54.5
2049 Male, age 76, both hemispheres 49.3
2657 Male, age 74, right hemisphere 45.2
1811 Female, age 42, unknown 38.8
2571 Male, age 75, right hemisphere 38.4
Nucleus reuniens
nTPM: 52.8
2205 Male, age 80, left hemisphere 60.4
2212 Female, age 67, left hemisphere 50.7
2210 Female, age 85, left hemisphere 47.4
Nucleus rhomboideus
nTPM: 56.4
2206 Male, age 80, both hemispheres 69.1
2280 Female, age 85, left hemisphere 51.0
2213 Female, age 67, left hemisphere 49.1
Posterior thalamic nucleus
nTPM: 38.6
2495 Female, age 67, right hemisphere 47.7
2649 Female, age 94, both hemispheres 36.3
2655 Male, age 74, right hemisphere 35.9
2266 Male, age 76, right hemisphere 34.4
Pulvinar
nTPM: 51.0
1932 Male, age 80, right hemisphere 66.7
2398 Male, age 61, left hemisphere 65.6
2724 Male, age 74, right hemisphere 58.0
2214 Male, age 76, right hemisphere 52.7
2582 Female, age 72, unknown 51.6
2499 Male, age 66, unknown 47.2
1899 Female, age 42, unknown 45.8
1929 Male, age 48, unknown 43.2
1972 Male, age 62, unknown 41.8
2496 Female, age 67, right hemisphere 37.4
Subthalamic nucleus
nTPM: 48.0
2282 Male, age 61, both hemispheres 74.9
2216 Male, age 48, unknown 56.3
2124 Male, age 62, unknown 56.1
2406 Female, age 72, unknown 46.2
2275 Male, age 66, unknown 43.8
2779 Female, age 42, unknown 42.8
2056 Female, age 72, unknown 42.6
2658 Male, age 74, both hemispheres 21.4
Ventral posterolateral thalamic nucleus
nTPM: 49.9
2197 Male, age 80, both hemispheres 68.4
2397 Male, age 61, right hemisphere 56.5
2581 Female, age 72, unknown 48.4
2570 Male, age 75, right hemisphere 46.9
2740 Male, age 76, right hemisphere 45.5
2578 Male, age 74, both hemispheres 33.7
Ventral posteromedial thalamic nucleus
nTPM: 52.7
2758 Male, age 80, both hemispheres 63.1
2281 Male, age 75, right hemisphere 56.6
2127 Male, age 76, right hemisphere 56.1
2202 Male, age 61, left hemisphere 55.3
2653 Male, age 74, both hemispheres 32.4
Ventral thalamic nuclei
nTPM: 49.3
2204 Male, age 80, both hemispheres 71.0
2858 Female, age 72, unknown 53.7
2285 Male, age 62, unknown 49.5
2291 Female, age 72, unknown 48.5
1860 Male, age 76, both hemispheres 47.5
1912 Female, age 42, unknown 46.2
2580 Male, age 66, unknown 45.6
2652 Male, age 74, left hemisphere 42.7
1845 Male, age 48, unknown 38.8
Ventromedial nucleus
nTPM: 50.5
1982 Female, age 72, unknown 52.4
1822 Female, age 42, unknown 48.5
Zona incerta
nTPM: 45.4
2208 Male, age 80, right hemisphere 63.3
2403 Male, age 62, unknown 53.2
2663 Female, age 72, unknown 53.2
2215 Male, age 66, unknown 34.3
2822 Male, age 74, right hemisphere 23.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 172.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 172.8
FF:10154-103A1 76 years, female 172.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 26.3
Samples: 4

Max nTPM: 32.6
Min nTPM: 21.3
Sample A Male 32.6
Sample B Male 26.3
Sample C Female 25.0
Sample D Female 21.3

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