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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:370.4 nTPM
HPA:370.4 nTPM
GTEx:524.2 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:126.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 370.4
Sample id Sample description nTPM
Amygdala
nTPM: 370.4
2814 Male, age 76, right hemisphere 384.9
2695 Female, age 67, right hemisphere 371.5
2514 Male, age 75, right hemisphere 369.3
1987 Female, age 91, left hemisphere 365.7
2517 Female, age 94, left hemisphere 360.6
Basal amygdala
nTPM: 363.3
2609 Male, age 75, right hemisphere 370.7
2110 Male, age 80, left hemisphere 368.5
1955 Male, age 76, both hemispheres 368.2
2685 Female, age 94, left hemisphere 362.2
2243 Female, age 91, right hemisphere 358.8
2827 Female, age 67, right hemisphere 351.2
Central amygdala
nTPM: 361.8
1905 Male, age 76, both hemispheres 375.5
2826 Female, age 94, left hemisphere 361.8
2515 Male, age 75, right hemisphere 357.7
2701 Female, age 91, right hemisphere 357.2
2239 Male, age 80, left hemisphere 356.5
Corticomedial amygdala
nTPM: 362.7
2829 Male, age 80, left hemisphere 371.5
2240 Male, age 76, both hemispheres 367.1
2429 Female, age 94, left hemisphere 366.2
2428 Male, age 75, right hemisphere 364.7
2242 Female, age 91, right hemisphere 362.6
2535 Female, age 67, right hemisphere 344.2
Lateral amygdala
nTPM: 358.0
1883 Male, age 76, both hemispheres 377.4
2534 Female, age 94, left hemisphere 361.9
2516 Male, age 75, right hemisphere 361.2
2256 Male, age 80, left hemisphere 350.6
2830 Female, age 67, right hemisphere 349.0
2255 Female, age 91, right hemisphere 347.6
Stria terminalis, bed nucleus
nTPM: 364.8
1974 Female, age 91, both hemispheres 378.6
2486 Female, age 94, both hemispheres 360.8
2201 Male, age 74, unknown 354.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 524.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 524.2
Samples: 152

Max nTPM: 2496.6
Min nTPM: 149.2
Std nTPM: 262.4
Median nTPM: 472.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2496.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1665.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1504.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1191.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1115.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1047.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 951.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 924.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 900.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 881.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 838.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 757.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 740.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 726.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 724.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 715.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 704.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 699.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 698.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 693.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 684.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 683.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 670.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 655.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 651.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 644.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 637.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 629.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 626.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 626.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 621.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 613.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 609.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 608.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 607.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 605.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 597.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 594.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 588.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 580.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 575.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 572.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 565.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 561.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 555.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 543.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 540.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 540.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 536.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 535.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 532.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 531.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 528.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 520.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 514.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 511.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 508.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 505.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 503.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 500.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 498.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 497.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 497.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 496.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 495.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 490.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 489.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 489.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 489.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 484.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 480.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 477.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 477.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 477.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 476.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 473.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 471.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 470.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 470.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 467.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 467.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 462.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 458.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 451.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 449.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 448.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 445.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 445.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 440.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 439.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 430.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 427.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 420.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 418.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 417.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 417.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 416.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 415.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 414.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 410.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 409.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 408.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 407.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 403.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 402.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 402.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 401.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 393.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 392.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 390.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 389.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 388.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 384.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 384.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 384.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 382.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 380.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 378.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 378.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 374.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 374.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 373.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 370.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 370.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 361.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 359.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 358.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 358.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 357.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 356.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 356.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 354.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 350.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 350.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 349.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 348.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 346.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 334.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 324.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 324.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 317.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 306.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 298.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 290.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 289.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 273.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 271.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 263.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 256.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 242.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 240.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 149.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 84.2
FF:10151-102I7 76 years, female 84.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.2
Pig sample Sample description nTPM
Amygdala
nTPM: 39.2
Samples: 4

Max nTPM: 46.3
Min nTPM: 28.8
Sample A Female 45.9
Sample B Female 46.3
Sample C Male 35.7
Sample D Male 28.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 126.9
Samples: 4

Max nTPM: 141.8
Min nTPM: 114.4
Sample A Male 114.4
Sample B Male 128.6
Sample C Female 141.8
Sample D Female 122.6

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