MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:374.6 nTPM
HPA:374.6 nTPM
GTEx:468.7 nTPM
FANTOM5:92.4 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:122.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 374.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 364.5
2411 Female, age 72, unknown 370.4
1870 Female, age 42, unknown 369.5
1827 Male, age 72, unknown 369.3
2828 Female, age 72, unknown 367.7
1833 Male, age 53, unknown 367.3
2019 Male, age 18, unknown 365.8
1830 Male, age 51, unknown 361.1
2219 Male, age 76, both hemispheres 360.2
2666 Male, age 74, left hemisphere 358.6
2586 Male, age 75, left hemisphere 355.5
Dorsal raphe nucleus
nTPM: 370.6
2298 Female, age 72, unknown 379.5
1828 Male, age 53, unknown 373.7
2047 Male, age 72, unknown 372.6
2016 Female, age 72, unknown 364.1
2750 Male, age 76, both hemispheres 363.2
Inferior colliculus
nTPM: 373.8
2097 Female, age 72, unknown 383.7
1890 Male, age 53, unknown 373.6
1848 Female, age 42, unknown 370.3
2849 Male, age 72, unknown 367.6
Median raphe nucleus
nTPM: 364.0
2220 Male, age 76, midline 364.0
Pedunculopontine tegmental nucleus
nTPM: 374.6
1921 Female, age 85, both hemispheres 381.0
2338 Male, age 61, both hemispheres 375.1
2334 Male, age 80, both hemispheres 367.7
Periaquaductal grey, anterior
nTPM: 366.6
1947 Male, age 18, unknown 376.8
1795 Male, age 51, unknown 364.0
2502 Female, age 75, unknown 358.9
Periaquaductal grey, dorsal
nTPM: 368.4
2850 Male, age 76, both hemispheres 375.0
1831 Male, age 72, unknown 369.8
1840 Male, age 53, unknown 367.3
2464 Female, age 72, unknown 361.6
Periaquaductal grey, lateral
nTPM: 366.1
2053 Male, age 18, unknown 371.7
2272 Male, age 74, both hemispheres 367.6
2140 Male, age 76, both hemispheres 359.0
Pretectal area
nTPM: 371.8
1944 Female, age 72, unknown 385.6
1817 Female, age 42, unknown 381.3
2007 Male, age 72, unknown 378.6
1815 Male, age 53, unknown 375.2
1816 Male, age 51, unknown 374.8
2273 Male, age 74, both hemispheres 372.9
2667 Female, age 75, unknown 370.2
2224 Female, age 72, unknown 369.9
2825 Male, age 18, unknown 365.3
2407 Male, age 75, both hemispheres 362.4
2316 Male, age 76, right hemisphere 353.4
Red nucleus
nTPM: 368.6
1821 Female, age 72, unknown 391.0
2725 Female, age 75, unknown 378.9
1865 Male, age 51, unknown 373.8
2823 Male, age 76, right hemisphere 372.0
1954 Female, age 42, unknown 368.5
1904 Male, age 53, unknown 366.2
2503 Female, age 72, unknown 364.3
2769 Male, age 72, unknown 364.0
2584 Male, age 75, left hemisphere 363.1
2227 Male, age 72, unknown 362.0
2785 Male, age 18, unknown 359.6
2588 Male, age 74, left hemisphere 359.3
Substantia nigra
nTPM: 374.0
1889 Female, age 72, unknown 386.6
1916 Female, age 42, unknown 380.1
1941 Male, age 53, unknown 379.0
2241 Male, age 72, unknown 377.8
2699 Male, age 18, unknown 376.0
1851 Male, age 51, unknown 375.8
2590 Female, age 75, unknown 370.8
2409 Female, age 72, unknown 370.5
2665 Male, age 74, both hemispheres 368.3
2583 Male, age 75, right hemisphere 354.8
Superior colliculus
nTPM: 367.5
2587 Male, age 74, left hemisphere 383.7
1895 Male, age 76, right hemisphere 381.9
2087 Female, age 72, unknown 368.5
2668 Female, age 75, unknown 367.7
1995 Male, age 72, unknown 363.1
1796 Male, age 53, unknown 362.8
1839 Male, age 51, unknown 362.8
1913 Female, age 42, unknown 362.8
2261 Male, age 18, unknown 361.7
2664 Male, age 75, both hemispheres 360.0
Ventral tegmental area
nTPM: 368.2
1915 Female, age 42, unknown 374.4
2410 Female, age 72, unknown 371.1
2218 Male, age 76, both hemispheres 370.7
2223 Female, age 72, unknown 366.6
1942 Male, age 51, unknown 366.5
2021 Male, age 53, unknown 360.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 468.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 468.7
Samples: 139

Max nTPM: 1230.4
Min nTPM: 243.0
Std nTPM: 136.7
Median nTPM: 452.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1230.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1020.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 828.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 740.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 730.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 720.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 709.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 686.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 683.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 661.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 653.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.4
FF:10158-103A5 76 years, female 92.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.4
Pig sample Sample description nTPM
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 72.2
Min nTPM: 55.4
Sample A Female 55.4
Sample B Female 70.0
Sample C Male 72.2
Sample D Male 59.0
Periaqueductal gray
nTPM: 45.6
Samples: 3

Max nTPM: 57.8
Min nTPM: 36.1
Sample B Female 42.8
Sample C Male 57.8
Sample D Male 36.1
Substantia nigra
nTPM: 67.2
Samples: 4

Max nTPM: 97.2
Min nTPM: 38.0
Sample A Female 97.2
Sample B Female 57.9
Sample C Male 75.8
Sample D Male 38.0
Superior colliculi
nTPM: 72.4
Samples: 4

Max nTPM: 81.5
Min nTPM: 56.3
Sample A Female 78.8
Sample B Female 72.9
Sample C Male 81.5
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 122.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 122.5
Samples: 4

Max nTPM: 142.0
Min nTPM: 110.5
Sample A Male 142.0
Sample B Male 119.9
Sample C Female 117.7
Sample D Female 110.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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