MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:592.5 nTPM
HPA:592.5 nTPM
GTEx:714.4 nTPM
FANTOM5:1003.2 Scaled Tags Per Million
Pig:1059.1 nTPM
Mouse:1033.9 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 592.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 502.0
2411 Female, age 72, unknown 545.2
2828 Female, age 72, unknown 540.7
1870 Female, age 42, unknown 532.0
2586 Male, age 75, left hemisphere 519.5
1827 Male, age 72, unknown 502.8
1830 Male, age 51, unknown 490.5
1833 Male, age 53, unknown 486.0
2219 Male, age 76, both hemispheres 475.3
2019 Male, age 18, unknown 471.3
2666 Male, age 74, left hemisphere 456.6
Dorsal raphe nucleus
nTPM: 548.9
2298 Female, age 72, unknown 603.2
2047 Male, age 72, unknown 581.4
2750 Male, age 76, both hemispheres 556.0
1828 Male, age 53, unknown 530.7
2016 Female, age 72, unknown 473.2
Inferior colliculus
nTPM: 469.4
2097 Female, age 72, unknown 494.2
1848 Female, age 42, unknown 479.9
1890 Male, age 53, unknown 472.3
2849 Male, age 72, unknown 431.1
Median raphe nucleus
nTPM: 587.3
2220 Male, age 76, midline 587.3
Pedunculopontine tegmental nucleus
nTPM: 546.5
2334 Male, age 80, both hemispheres 579.0
2338 Male, age 61, both hemispheres 569.0
1921 Female, age 85, both hemispheres 491.6
Periaquaductal grey, anterior
nTPM: 543.8
1795 Male, age 51, unknown 559.3
1947 Male, age 18, unknown 548.6
2502 Female, age 75, unknown 523.5
Periaquaductal grey, dorsal
nTPM: 469.0
2850 Male, age 76, both hemispheres 483.7
1840 Male, age 53, unknown 482.0
1831 Male, age 72, unknown 472.3
2464 Female, age 72, unknown 438.1
Periaquaductal grey, lateral
nTPM: 486.8
2272 Male, age 74, both hemispheres 515.4
2053 Male, age 18, unknown 478.2
2140 Male, age 76, both hemispheres 466.9
Pretectal area
nTPM: 508.5
2273 Male, age 74, both hemispheres 551.6
1944 Female, age 72, unknown 545.6
2224 Female, age 72, unknown 537.5
1816 Male, age 51, unknown 520.0
2007 Male, age 72, unknown 511.1
1817 Female, age 42, unknown 510.2
2667 Female, age 75, unknown 504.0
2407 Male, age 75, both hemispheres 493.8
2825 Male, age 18, unknown 490.8
1815 Male, age 53, unknown 489.4
2316 Male, age 76, right hemisphere 439.0
Red nucleus
nTPM: 513.7
2725 Female, age 75, unknown 551.7
1904 Male, age 53, unknown 537.3
1821 Female, age 72, unknown 535.6
2227 Male, age 72, unknown 532.6
2769 Male, age 72, unknown 528.3
2503 Female, age 72, unknown 525.7
1865 Male, age 51, unknown 522.2
1954 Female, age 42, unknown 517.1
2785 Male, age 18, unknown 506.3
2584 Male, age 75, left hemisphere 498.4
2823 Male, age 76, right hemisphere 477.7
2588 Male, age 74, left hemisphere 431.6
Substantia nigra
nTPM: 577.4
1916 Female, age 42, unknown 769.4
1851 Male, age 51, unknown 638.4
2699 Male, age 18, unknown 595.5
2590 Female, age 75, unknown 571.8
1941 Male, age 53, unknown 569.8
2241 Male, age 72, unknown 553.3
1889 Female, age 72, unknown 550.1
2583 Male, age 75, right hemisphere 533.5
2409 Female, age 72, unknown 506.5
2665 Male, age 74, both hemispheres 486.2
Superior colliculus
nTPM: 497.6
1796 Male, age 53, unknown 546.0
2261 Male, age 18, unknown 534.3
2587 Male, age 74, left hemisphere 522.9
2087 Female, age 72, unknown 522.7
1913 Female, age 42, unknown 511.4
2664 Male, age 75, both hemispheres 489.8
1995 Male, age 72, unknown 480.9
2668 Female, age 75, unknown 480.4
1839 Male, age 51, unknown 459.9
1895 Male, age 76, right hemisphere 427.9
Ventral tegmental area
nTPM: 592.5
1915 Female, age 42, unknown 626.9
2218 Male, age 76, both hemispheres 622.8
2410 Female, age 72, unknown 612.5
2223 Female, age 72, unknown 608.3
1942 Male, age 51, unknown 545.1
2021 Male, age 53, unknown 539.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 714.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 714.4
Samples: 139

Max nTPM: 1735.0
Min nTPM: 324.0
Std nTPM: 240.0
Median nTPM: 664.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1735.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1710.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1591.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1391.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1389.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1188.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1184.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1176.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1142.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1032.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1006.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1003.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1003.2
FF:10158-103A5 76 years, female 1003.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 1059.1
Pig sample Sample description nTPM
Midbrain
nTPM: 1059.1
Samples: 4

Max nTPM: 1688.7
Min nTPM: 752.9
Sample A Female 1688.7
Sample B Female 874.7
Sample C Male 920.2
Sample D Male 752.9
Periaqueductal gray
nTPM: 713.8
Samples: 3

Max nTPM: 806.1
Min nTPM: 599.5
Sample B Female 735.9
Sample C Male 806.1
Sample D Male 599.5
Substantia nigra
nTPM: 1020.5
Samples: 4

Max nTPM: 1286.5
Min nTPM: 836.5
Sample A Female 1286.5
Sample B Female 867.0
Sample C Male 1091.8
Sample D Male 836.5
Superior colliculi
nTPM: 967.9
Samples: 4

Max nTPM: 1155.1
Min nTPM: 863.7
Sample A Female 1155.1
Sample B Female 922.6
Sample C Male 930.3
Sample D Male 863.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1033.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1033.9
Samples: 4

Max nTPM: 1101.0
Min nTPM: 979.5
Sample A Male 1101.0
Sample B Male 979.5
Sample C Female 1021.8
Sample D Female 1033.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
67792203 Antisense, RP_040920_01_D11, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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