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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:589.8 nTPM
HPA:589.8 nTPM
GTEx:922.5 nTPM
FANTOM5:1690.0 Scaled Tags Per Million
Pig:1348.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 589.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 574.5
1981 Female, age 72, midline 666.6
2565 Male, age 75, midline 622.7
2194 Female, age 79, both hemispheres 550.2
2816 Male, age 47, midline 536.9
2048 Male, age 55, midline 495.9
Cervical spinal cord, dorsal horn
nTPM: 589.3
2173 Female, age 72, unknown 707.7
2296 Male, age 66, both hemispheres 698.2
2069 Male, age 47, both hemispheres 619.8
2721 Male, age 90, both hemispheres 537.3
1877 Male, age 55, unknown 500.4
2297 Male, age 75, both hemispheres 472.0
Cervical spinal cord, ventral horn
nTPM: 589.8
2098 Female, age 72, unknown 751.0
2480 Male, age 75, both hemispheres 604.0
2809 Male, age 90, both hemispheres 601.3
2295 Male, age 66, both hemispheres 560.6
2068 Male, age 55, unknown 549.8
2820 Female, age 79, both hemispheres 472.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 922.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 922.5
Samples: 159

Max nTPM: 1695.9
Min nTPM: 348.0
Std nTPM: 257.5
Median nTPM: 902.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1695.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1625.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1554.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1535.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1512.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1486.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1476.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1409.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1360.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1327.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1319.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1313.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1301.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1292.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1266.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1264.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1243.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1235.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1230.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1214.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1200.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1195.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1190.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1179.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1178.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1168.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1149.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1136.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1129.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1126.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1123.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1110.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1109.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1102.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1097.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1093.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1091.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1086.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1085.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1081.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1076.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1071.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1067.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1063.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1060.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1059.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1056.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1055.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1055.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1052.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1048.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1035.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1034.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1026.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1016.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1012.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1008.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1005.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 996.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 991.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 991.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 986.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 986.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 980.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 967.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 964.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 958.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 949.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 946.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 945.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 940.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 935.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 928.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 927.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 922.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 918.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 917.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 908.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 907.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 902.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 901.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 897.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 894.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 886.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 883.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 882.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 877.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 871.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 867.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 866.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 862.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 852.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 849.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 843.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 837.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 832.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 829.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 828.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 826.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 826.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 825.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 823.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 820.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 817.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 815.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 814.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 811.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 808.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 805.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 801.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 791.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 787.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 775.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 762.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 762.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 762.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 759.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 754.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 751.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 742.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 740.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 738.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 732.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 730.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 723.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 711.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 700.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 692.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 689.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 688.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 678.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 670.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 662.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 661.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 660.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 658.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 657.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 656.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 652.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 645.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 620.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 600.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 595.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 580.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 570.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 544.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 543.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 539.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 531.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 519.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 513.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 504.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 503.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 498.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 496.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 478.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 476.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 468.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 348.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1690.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1690.0
FF:10181-103D1 60 years, female 1953.5
FF:10159-103A6 76 years, female 1426.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1348.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1163.5
Samples: 4

Max nTPM: 1433.9
Min nTPM: 1061.3
Sample A Female 1065.7
Sample B Female 1061.3
Sample C Male 1433.9
Sample D Male 1093.1
Ventral spinal cord
nTPM: 1349.0
Samples: 4

Max nTPM: 1381.5
Min nTPM: 1291.3
Sample A Female 1355.8
Sample B Female 1291.3
Sample C Male 1381.5
Sample D Male 1367.2

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