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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:629.8 nTPM
HPA:629.8 nTPM
FANTOM5:1780.2 Scaled Tags Per Million
Pig:1001.4 nTPM
Allen mouse:9.7 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 629.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 488.0
2301 Female, age 85, both hemispheres 525.5
2090 Male, age 80, both hemispheres 501.0
2188 Female, age 91, both hemispheres 480.9
1984 Male, age 76, both hemispheres 444.6
Dorsal cochlear nucleus
nTPM: 491.0
2187 Female, age 91, both hemispheres 552.3
2058 Male, age 76, both hemispheres 491.1
2802 Male, age 74, right hemisphere 482.8
2370 Male, age 61, both hemispheres 473.6
2378 Male, age 80, both hemispheres 455.0
Dorsal tegmental nucleus
nTPM: 570.0
2358 Male, age 61, both hemispheres 699.9
2083 Male, age 80, both hemispheres 562.6
2326 Male, age 74, both hemispheres 535.8
1936 Male, age 76, left hemisphere 481.7
Dorsolateral tegmental area
nTPM: 532.0
2337 Male, age 61, both hemispheres 637.8
2654 Male, age 80, both hemispheres 539.2
2751 Female, age 85, both hemispheres 511.2
2141 Male, age 76, both hemispheres 486.9
2360 Male, age 74, both hemispheres 485.2
Kolliker-Fuse nucleus
nTPM: 543.0
2163 Male, age 80, both hemispheres 612.0
2315 Male, age 76, right hemisphere 541.9
2793 Female, age 91, left hemisphere 475.0
Lateral lemniscal nuclei
nTPM: 491.2
2169 Male, age 76, both hemispheres 541.4
2746 Female, age 85, left hemisphere 497.3
2453 Male, age 74, right hemisphere 492.8
2036 Male, age 80, both hemispheres 478.3
2320 Female, age 91, left hemisphere 446.4
Lateral parabrachial nucleus
nTPM: 479.4
2139 Female, age 85, right hemisphere 524.2
2013 Male, age 80, both hemispheres 492.3
2792 Male, age 76, both hemispheres 467.5
2790 Male, age 61, both hemispheres 433.6
Lateral vestibular nucleus
nTPM: 551.7
2184 Male, age 76, both hemispheres 567.7
2311 Male, age 80, both hemispheres 535.8
Locus coeruleus
nTPM: 629.8
2123 Female, age 91, both hemispheres 745.7
2014 Male, age 55, unknown 688.3
2720 Male, age 74, both hemispheres 637.6
1980 Male, age 76, both hemispheres 612.2
2162 Male, age 80, both hemispheres 606.5
2317 Female, age 72, unknown 603.6
2788 Male, age 74, unknown 514.7
Medial olivary nucleus
nTPM: 576.0
1943 Male, age 61, both hemispheres 630.9
2138 Female, age 91, both hemispheres 599.6
1962 Male, age 76, both hemispheres 556.4
2851 Male, age 80, both hemispheres 517.0
Medial parabrachial nucleus
nTPM: 520.0
2170 Female, age 91, both hemispheres 615.7
2156 Male, age 61, both hemispheres 528.3
2786 Male, age 76, both hemispheres 494.6
2854 Male, age 80, both hemispheres 491.6
2463 Female, age 85, right hemisphere 469.9
Medial periolivary nuclei
nTPM: 512.7
2063 Male, age 76, both hemispheres 554.0
2171 Female, age 85, both hemispheres 552.5
2791 Male, age 74, right hemisphere 526.6
2081 Male, age 80, both hemispheres 482.8
2458 Female, age 91, both hemispheres 447.5
Motor facial nucleus
nTPM: 505.1
2365 Male, age 74, right hemisphere 572.5
2062 Male, age 76, both hemispheres 567.6
2126 Male, age 61, both hemispheres 528.7
2697 Female, age 85, both hemispheres 471.0
2327 Male, age 80, both hemispheres 446.8
2795 Female, age 91, both hemispheres 443.7
Motor trigeminal nucleus
nTPM: 498.5
2335 Male, age 61, both hemispheres 556.2
2560 Male, age 74, both hemispheres 508.4
2079 Male, age 80, both hemispheres 480.2
2309 Male, age 76, both hemispheres 475.9
2321 Female, age 91, both hemispheres 471.9
Nuclei of the trapezoid body
nTPM: 511.7
1983 Male, age 76, both hemispheres 586.9
2159 Male, age 61, both hemispheres 542.5
2735 Female, age 85, both hemispheres 535.2
2166 Male, age 80, both hemispheres 471.8
2368 Female, age 91, both hemispheres 422.1
Paramedian reticular nucleus
nTPM: 532.0
2057 Male, age 80, both hemispheres 582.2
2313 Male, age 61, both hemispheres 581.3
2050 Female, age 85, both hemispheres 514.9
2052 Male, age 76, both hemispheres 449.6
Pontine nuclei
nTPM: 542.5
2787 Female, age 85, both hemispheres 600.2
2109 Female, age 72, unknown 587.1
1863 Male, age 55, unknown 570.1
1968 Male, age 76, left hemisphere 566.3
2454 Male, age 74, left hemisphere 525.9
2115 Male, age 80, left hemisphere 505.8
2727 Male, age 61, right hemisphere 502.1
2319 Female, age 91, both hemispheres 482.8
Pontine raphe nucleus
nTPM: 502.0
2122 Female, age 85, midline 510.6
2853 Male, age 76, midline 493.4
Posteroventral cochlear nucleus
nTPM: 494.9
2070 Male, age 76, both hemispheres 529.9
2752 Female, age 85, both hemispheres 504.1
2341 Male, age 80, both hemispheres 482.2
2135 Female, age 91, both hemispheres 480.7
2371 Male, age 61, both hemispheres 477.9
Principal sensory trigeminal nucleus
nTPM: 505.2
2324 Male, age 76, both hemispheres 567.3
2158 Male, age 61, both hemispheres 515.7
2008 Male, age 80, left hemisphere 469.3
2367 Female, age 91, left hemisphere 468.5
Reticular pontine nucleus, caudal
nTPM: 491.2
2092 Male, age 76, both hemispheres 541.3
2559 Male, age 74, both hemispheres 539.7
2332 Male, age 80, right hemisphere 456.1
2457 Female, age 91, both hemispheres 427.6
Reticular pontine nucleus, oral
nTPM: 505.4
1939 Male, age 80, both hemispheres 553.7
2361 Male, age 74, both hemispheres 531.1
2167 Male, age 76, both hemispheres 522.5
2012 Female, age 85, both hemispheres 485.6
2366 Female, age 91, both hemispheres 434.1
Reticulotegmental nucleus
nTPM: 512.2
2452 Male, age 74, both hemispheres 519.3
2325 Male, age 76, both hemispheres 519.0
2322 Female, age 91, both hemispheres 510.8
2333 Male, age 80, both hemispheres 499.8
Spinal trigeminal nucleus, oral
nTPM: 525.0
2164 Male, age 80, both hemispheres 571.3
2737 Female, age 85, both hemispheres 514.5
1978 Male, age 76, both hemispheres 489.2
Subcoeruleus area
nTPM: 511.4
2323 Female, age 91, left hemisphere 561.5
2451 Male, age 74, both hemispheres 512.4
2369 Female, age 85, left hemisphere 497.6
1958 Male, age 80, both hemispheres 496.6
2089 Male, age 76, left hemisphere 489.1
Superior olive
nTPM: 488.5
2364 Male, age 74, right hemisphere 552.8
2020 Male, age 76, both hemispheres 494.2
1875 Female, age 85, both hemispheres 474.4
2329 Male, age 80, right hemisphere 460.6
2561 Female, age 91, both hemispheres 460.4
Superior vestibular nucleus
nTPM: 534.6
2383 Male, age 74, both hemispheres 548.3
2015 Male, age 80, both hemispheres 535.9
2061 Male, age 76, both hemispheres 519.5
Ventral periolivary nuclei
nTPM: 493.4
2130 Female, age 85, both hemispheres 558.1
2165 Male, age 80, both hemispheres 507.7
2023 Male, age 76, both hemispheres 482.1
2794 Female, age 91, left hemisphere 425.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 510.7
2359 Male, age 61, both hemispheres 580.8
2449 Male, age 74, both hemispheres 528.1
2840 Female, age 85, both hemispheres 506.6
1959 Male, age 76, both hemispheres 503.3
2161 Male, age 80, both hemispheres 495.1
2456 Female, age 91, both hemispheres 450.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1780.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1779.9
FF:10182-103D2 60 years, female 2331.4
FF:10165-103B3 76 years, female 1228.3
Pons
Scaled Tags Per Million: 1780.2
FF:10033-101E6 18-54 years, mixed 1780.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 1001.4
Pig sample Sample description nTPM
Pons
nTPM: 1001.4
Samples: 4

Max nTPM: 1186.7
Min nTPM: 728.3
Sample A Female 1186.7
Sample B Female 728.3
Sample C Male 1001.8
Sample D Male 1088.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 9.7
67792203 Antisense, RP_040920_01_D11, Mouse strain C57BL/6J (56 days, male) 9.7

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by the Knut & Alice Wallenberg Foundation.