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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:838.9 nTPM
GTEx:865.3 nTPM
FANTOM5:1381.4 Scaled Tags Per Million
Pig:424.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 838.9
Sample id Sample description nTPM
Putamen
nTPM: 838.9
2466 Female, age 79, unknown 937.7
1937 Female, age 91, right hemisphere 929.4
1838 Male, age 80, right hemisphere 915.7
2482 Female, age 94, left hemisphere 911.9
1829 Male, age 74, unknown 848.5
2489 Female, age 72, unknown 707.8
2647 Male, age 75, left hemisphere 621.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 865.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 865.3
Samples: 205

Max nTPM: 1473.8
Min nTPM: 470.5
Std nTPM: 161.6
Median nTPM: 854.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1473.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1355.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1316.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1298.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1266.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1210.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1207.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1179.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1176.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1151.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1148.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1125.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1107.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1105.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1090.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1074.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1068.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1064.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1063.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1063.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1059.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1056.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1048.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1041.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1040.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1038.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1029.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1028.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1025.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1020.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1017.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1013.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1011.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1010.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1010.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1008.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1005.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1003.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1003.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 1000.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 999.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 997.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 991.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 988.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 986.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 983.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 978.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 978.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 977.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 976.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 976.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 973.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 973.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 972.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 969.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 968.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 968.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 968.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 965.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 962.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 955.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 954.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 949.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 944.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 942.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 938.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 933.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 916.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 915.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 913.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 911.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 908.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 908.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 907.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 905.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 904.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 904.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 902.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 901.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 900.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 898.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 897.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 895.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 888.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 887.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 881.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 878.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 877.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 877.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 876.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 871.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 867.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 867.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 866.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 865.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 865.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 863.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 860.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 859.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 859.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 856.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 856.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 854.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 853.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 851.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 846.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 845.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 841.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 835.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 833.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 829.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 824.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 823.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 820.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 813.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 813.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 813.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 813.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 812.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 812.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 812.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 810.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 809.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 804.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 803.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 800.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 800.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 800.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 799.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 799.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 797.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 797.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 796.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 796.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 794.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 793.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 793.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 792.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 792.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 789.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 789.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 787.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 786.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 785.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 782.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 782.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 780.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 780.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 776.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 772.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 767.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 763.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 762.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 760.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 758.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 751.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 748.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 747.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 745.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 745.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 744.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 743.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 740.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 731.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 729.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 727.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 725.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 724.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 723.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 720.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 718.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 716.1
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 710.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 709.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 709.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 708.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 706.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 705.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 698.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 695.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 695.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 693.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 691.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 690.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 688.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 677.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 673.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 664.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 654.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 650.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 625.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 621.4
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 612.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 612.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 607.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 591.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 590.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 587.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 584.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 577.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 572.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 559.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 550.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 545.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 470.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1381.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1381.4
FF:10176-103C5 60 years, female 1381.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 424.6
Pig sample Sample description nTPM
Putamen
nTPM: 424.6
Samples: 4

Max nTPM: 509.4
Min nTPM: 302.6
Sample A Female 463.2
Sample B Female 302.6
Sample C Male 509.4
Sample D Male 423.3

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