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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1297.4 nTPM
HPA:1297.4 nTPM
GTEx:1355.2 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:213.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1297.4
Sample id Sample description nTPM
Amygdala
nTPM: 1297.4
2695 Female, age 67, right hemisphere 1328.2
2514 Male, age 75, right hemisphere 1304.7
2814 Male, age 76, right hemisphere 1293.5
1987 Female, age 91, left hemisphere 1288.9
2517 Female, age 94, left hemisphere 1271.7
Basal amygdala
nTPM: 1264.4
2827 Female, age 67, right hemisphere 1307.5
2609 Male, age 75, right hemisphere 1270.1
2110 Male, age 80, left hemisphere 1269.4
2685 Female, age 94, left hemisphere 1257.5
1955 Male, age 76, both hemispheres 1252.8
2243 Female, age 91, right hemisphere 1229.1
Central amygdala
nTPM: 1281.7
2826 Female, age 94, left hemisphere 1347.2
1905 Male, age 76, both hemispheres 1287.8
2515 Male, age 75, right hemisphere 1285.4
2701 Female, age 91, right hemisphere 1246.0
2239 Male, age 80, left hemisphere 1242.3
Corticomedial amygdala
nTPM: 1253.8
2428 Male, age 75, right hemisphere 1276.5
2829 Male, age 80, left hemisphere 1261.4
2535 Female, age 67, right hemisphere 1249.0
2429 Female, age 94, left hemisphere 1248.8
2240 Male, age 76, both hemispheres 1248.6
2242 Female, age 91, right hemisphere 1238.5
Lateral amygdala
nTPM: 1281.8
2830 Female, age 67, right hemisphere 1332.6
2516 Male, age 75, right hemisphere 1310.4
2534 Female, age 94, left hemisphere 1295.6
1883 Male, age 76, both hemispheres 1266.2
2256 Male, age 80, left hemisphere 1258.0
2255 Female, age 91, right hemisphere 1227.8
Stria terminalis, bed nucleus
nTPM: 1245.1
1974 Female, age 91, both hemispheres 1265.3
2201 Male, age 74, unknown 1236.2
2486 Female, age 94, both hemispheres 1233.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1355.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1355.2
Samples: 152

Max nTPM: 4295.6
Min nTPM: 576.9
Std nTPM: 617.7
Median nTPM: 1189.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4295.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3999.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3724.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3019.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3008.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2832.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2756.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2486.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2445.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2410.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2370.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2292.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2286.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2275.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2188.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2148.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2125.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2093.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1997.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1948.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1942.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1904.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1897.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1866.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1760.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1712.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1656.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1610.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1608.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1600.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1600.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1593.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1585.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1584.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1567.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1554.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1548.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1543.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1531.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1522.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1493.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1489.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1485.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1485.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1468.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1419.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1408.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1402.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1399.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1398.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1394.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1374.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1369.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1360.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1355.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1345.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1337.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1315.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1314.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1296.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1285.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1279.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1273.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1272.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1272.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1270.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1263.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1251.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1230.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1226.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1216.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1214.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1214.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1196.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1192.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1189.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1188.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1176.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1175.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1172.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1166.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1140.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1138.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1128.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1122.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1113.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1111.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1103.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1103.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1099.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1092.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1091.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1084.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1082.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1076.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1074.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1064.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1063.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1058.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1057.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1055.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1055.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1043.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1037.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1032.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1029.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1021.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1012.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1005.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 993.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 989.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 986.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 986.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 971.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 963.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 952.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 950.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 941.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 938.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 936.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 936.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 935.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 934.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 933.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 932.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 931.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 929.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 912.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 902.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 880.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 839.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 839.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 835.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 830.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 819.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 819.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 817.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 801.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 799.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 793.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 790.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 772.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 755.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 743.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 743.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 686.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 686.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 654.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 653.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 648.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 616.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 576.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.9
FF:10151-102I7 76 years, female 26.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.8
Pig sample Sample description nTPM
Amygdala
nTPM: 213.8
Samples: 4

Max nTPM: 280.0
Min nTPM: 125.2
Sample A Female 263.4
Sample B Female 280.0
Sample C Male 186.7
Sample D Male 125.2

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