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RPL39
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1382.7 nTPM
HPA:1382.7 nTPM
GTEx:1444.8 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:492.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1382.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1320.3
1981 Female, age 72, midline 1371.0
2048 Male, age 55, midline 1343.2
2565 Male, age 75, midline 1330.3
2816 Male, age 47, midline 1283.7
2194 Female, age 79, both hemispheres 1273.2
Cervical spinal cord, dorsal horn
nTPM: 1343.1
2173 Female, age 72, unknown 1419.7
2069 Male, age 47, both hemispheres 1394.3
2296 Male, age 66, both hemispheres 1360.9
1877 Male, age 55, unknown 1354.4
2297 Male, age 75, both hemispheres 1271.4
2721 Male, age 90, both hemispheres 1257.7
Cervical spinal cord, ventral horn
nTPM: 1382.7
2098 Female, age 72, unknown 1470.8
2480 Male, age 75, both hemispheres 1467.7
2809 Male, age 90, both hemispheres 1445.2
2068 Male, age 55, unknown 1340.2
2295 Male, age 66, both hemispheres 1318.3
2820 Female, age 79, both hemispheres 1254.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1444.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1444.8
Samples: 159

Max nTPM: 2928.8
Min nTPM: 526.8
Std nTPM: 526.7
Median nTPM: 1332.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2928.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2898.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2793.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2786.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2712.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2689.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2620.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2608.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2520.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2489.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2437.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2324.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2308.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2305.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2290.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2270.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2216.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2119.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2111.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2096.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2079.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2071.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2062.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2048.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2024.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2011.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1995.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1991.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1974.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1946.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1943.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1899.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1840.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1823.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1823.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1804.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1793.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1781.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1764.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1716.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1682.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1637.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1629.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1626.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1619.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1616.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1614.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1613.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1605.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1598.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1584.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1581.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1573.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1565.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1558.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1544.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1533.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1531.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1498.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1495.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1495.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1485.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1466.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1464.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1462.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1460.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1460.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1459.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1430.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1420.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1415.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1403.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1377.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1373.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1369.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1367.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1366.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1364.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1336.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1332.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1325.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1324.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1322.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1317.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1311.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1306.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1301.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1301.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1295.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1274.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1264.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1245.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1241.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1234.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1226.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1203.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1202.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1195.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1182.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1178.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1173.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1168.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1158.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1153.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1150.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1150.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1144.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1130.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1129.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1123.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1113.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1113.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1103.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1097.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1090.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1085.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1080.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1074.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1061.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1050.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1039.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1031.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1026.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1015.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1006.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1005.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1003.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 999.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 999.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 991.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 988.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 982.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 978.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 962.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 954.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 952.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 939.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 926.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 914.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 910.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 905.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 885.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 871.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 867.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 861.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 842.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 839.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 833.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 825.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 813.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 798.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 733.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 700.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 696.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 691.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 654.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 614.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 586.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 526.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 45.7
FF:10181-103D1 60 years, female 60.3
FF:10159-103A6 76 years, female 31.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 492.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 492.8
Samples: 4

Max nTPM: 777.7
Min nTPM: 321.0
Sample A Female 323.7
Sample B Female 548.8
Sample C Male 777.7
Sample D Male 321.0
Ventral spinal cord
nTPM: 430.9
Samples: 4

Max nTPM: 524.7
Min nTPM: 339.6
Sample A Female 339.6
Sample B Female 481.6
Sample C Male 524.7
Sample D Male 377.8

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