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RPL39
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:671.1 nTPM
GTEx:671.1 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:82.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 671.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 671.1
Samples: 105

Max nTPM: 1219.6
Min nTPM: 426.1
Std nTPM: 142.1
Median nTPM:
491_1 89 years, female 1219.6
490_1 67 years, female 1098.1
495_1 57 years, female 959.8
162_1 79 years, female 900.2
414_1 84 years, female 889.9
35_1 74 years, female 886.6
466_1 57 years, female 881.2
415_1 77 years, female 863.4
153_1 70 years, female 858.0
307_1 66 years, female 851.0
17_1 71 years, male 848.7
139_1 64 years, female 841.7
120_1 70 years, female 831.7
89_1 63 years, male 824.3
389_1 86 years, female 823.6
119_1 70 years, female 822.6
126_1 63 years, male 808.8
413_1 59 years, female 805.2
237_1 82 years, male 803.1
246_1 77 years, male 798.6
308_1 70 years, female 791.8
501_1 88 years, male 790.9
315_1 62 years, female 784.2
42_1 85 years, male 776.9
321_1 62 years, female 776.1
2_1 77 years, female 773.4
396_1 62 years, male 769.8
145_1 84 years, male 763.0
4_1 88 years, female 762.2
384_1 83 years, male 760.5
142_1 61 years, female 757.2
379_1 60 years, male 754.6
217_1 76 years, male 740.6
311_1 78 years, male 737.5
189_1 76 years, male 734.7
322_1 76 years, male 734.5
265_1 87 years, male 723.9
81_1 67 years, male 720.4
149_1 88 years, male 720.1
375_1 74 years, female 718.3
117_1 61 years, male 707.6
347_1 72 years, male 705.4
313_1 79 years, female 698.7
137_1 83 years, male 693.8
526_1 61 years, male 683.0
229_1 69 years, female 675.6
518_1 75 years, female 673.5
6_1 73 years, female 671.5
32_1 67 years, male 671.1
386_1 76 years, male 670.3
499_1 55 years, female 667.0
109_1 81 years, female 664.5
324_1 76 years, male 660.7
377_1 82 years, female 656.4
218_1 71 years, female 649.7
447_1 81 years, male 646.4
452_1 88 years, female 643.4
43_1 64 years, female 641.5
18_1 88 years, male 636.6
173_1 67 years, male 628.7
99_1 64 years, male 625.1
266_1 85 years, male 620.2
376_1 75 years, female 616.6
468_1 89 years, male 608.0
319_1 81 years, male 607.6
320_1 89 years, female 606.7
355_1 70 years, female 604.9
243_1 75 years, male 602.4
254_1 77 years, female 598.3
404_1 82 years, female 598.1
288_1 66 years, female 596.3
394_1 75 years, female 591.0
316_1 62 years, male 574.7
480_1 63 years, male 574.1
317_1 60 years, male 573.9
41_1 94 years, female 573.5
115_1 83 years, male 571.9
349_1 83 years, male 566.7
405_1 91 years, male 563.3
503_1 68 years, male 556.5
286_1 68 years, female 549.4
348_1 84 years, male 543.5
251_1 78 years, male 542.1
351_1 91 years, male 541.4
9_1 66 years, female 540.6
335_1 73 years, female 540.5
264_1 73 years, female 538.8
177_1 74 years, male 536.8
353_1 82 years, female 530.3
291_1 76 years, male 529.1
354_1 81 years, female 528.8
172_1 72 years, female 527.9
352_1 62 years, male 523.0
295_1 61 years, female 505.5
517_1 88 years, male 501.3
350_1 84 years, female 487.4
318_1 68 years, male 477.1
293_1 68 years, female 472.3
406_1 79 years, male 470.4
425_1 59 years, female 465.1
314_1 67 years, male 455.1
356_1 87 years, female 453.8
506_1 65 years, male 451.9
163_1 78 years, male 450.3
292_1 71 years, male 426.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 24.1
FF:10030-101E3 24-65 years, mixed 24.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.8
Pig sample Sample description nTPM
Retina
nTPM: 82.8
Samples: 4

Max nTPM: 93.7
Min nTPM: 72.3
Sample A Female 72.3
Sample B Female 88.0
Sample C Male 93.7
Sample D Male 77.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.