MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1305.9 nTPM
HPA:1305.9 nTPM
GTEx:1521.9 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:339.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1305.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1282.5
2666 Male, age 74, left hemisphere 1313.0
2411 Female, age 72, unknown 1305.0
1870 Female, age 42, unknown 1293.9
2019 Male, age 18, unknown 1292.6
1827 Male, age 72, unknown 1283.3
2828 Female, age 72, unknown 1276.3
1833 Male, age 53, unknown 1271.6
1830 Male, age 51, unknown 1269.6
2586 Male, age 75, left hemisphere 1268.6
2219 Male, age 76, both hemispheres 1250.8
Dorsal raphe nucleus
nTPM: 1292.4
2298 Female, age 72, unknown 1322.7
2016 Female, age 72, unknown 1295.1
2750 Male, age 76, both hemispheres 1291.0
1828 Male, age 53, unknown 1282.4
2047 Male, age 72, unknown 1270.6
Inferior colliculus
nTPM: 1275.9
2097 Female, age 72, unknown 1307.9
1890 Male, age 53, unknown 1289.5
1848 Female, age 42, unknown 1260.2
2849 Male, age 72, unknown 1245.9
Median raphe nucleus
nTPM: 1271.1
2220 Male, age 76, midline 1271.1
Pedunculopontine tegmental nucleus
nTPM: 1300.3
2338 Male, age 61, both hemispheres 1313.2
2334 Male, age 80, both hemispheres 1306.1
1921 Female, age 85, both hemispheres 1281.7
Periaquaductal grey, anterior
nTPM: 1286.7
2502 Female, age 75, unknown 1314.9
1795 Male, age 51, unknown 1273.1
1947 Male, age 18, unknown 1272.3
Periaquaductal grey, dorsal
nTPM: 1274.5
1831 Male, age 72, unknown 1282.6
1840 Male, age 53, unknown 1276.4
2464 Female, age 72, unknown 1274.1
2850 Male, age 76, both hemispheres 1264.7
Periaquaductal grey, lateral
nTPM: 1268.1
2053 Male, age 18, unknown 1288.9
2140 Male, age 76, both hemispheres 1264.4
2272 Male, age 74, both hemispheres 1251.1
Pretectal area
nTPM: 1281.1
2316 Male, age 76, right hemisphere 1301.7
2007 Male, age 72, unknown 1297.1
1815 Male, age 53, unknown 1295.7
1817 Female, age 42, unknown 1290.8
1816 Male, age 51, unknown 1289.6
2224 Female, age 72, unknown 1282.6
2825 Male, age 18, unknown 1275.8
1944 Female, age 72, unknown 1272.9
2407 Male, age 75, both hemispheres 1266.1
2667 Female, age 75, unknown 1263.0
2273 Male, age 74, both hemispheres 1257.2
Red nucleus
nTPM: 1296.0
1821 Female, age 72, unknown 1333.5
2503 Female, age 72, unknown 1325.0
1904 Male, age 53, unknown 1305.3
1865 Male, age 51, unknown 1305.0
2725 Female, age 75, unknown 1294.1
2588 Male, age 74, left hemisphere 1291.9
2769 Male, age 72, unknown 1289.0
2227 Male, age 72, unknown 1288.1
2584 Male, age 75, left hemisphere 1282.6
2785 Male, age 18, unknown 1280.7
1954 Female, age 42, unknown 1279.0
2823 Male, age 76, right hemisphere 1278.0
Substantia nigra
nTPM: 1305.9
1851 Male, age 51, unknown 1342.5
2241 Male, age 72, unknown 1338.5
2699 Male, age 18, unknown 1319.2
2409 Female, age 72, unknown 1319.1
2665 Male, age 74, both hemispheres 1315.6
1916 Female, age 42, unknown 1305.1
2590 Female, age 75, unknown 1294.8
1889 Female, age 72, unknown 1291.2
1941 Male, age 53, unknown 1276.1
2583 Male, age 75, right hemisphere 1256.7
Superior colliculus
nTPM: 1288.7
2587 Male, age 74, left hemisphere 1315.3
1913 Female, age 42, unknown 1313.6
1995 Male, age 72, unknown 1303.0
2668 Female, age 75, unknown 1289.3
1895 Male, age 76, right hemisphere 1286.7
1796 Male, age 53, unknown 1282.3
1839 Male, age 51, unknown 1278.9
2664 Male, age 75, both hemispheres 1276.4
2261 Male, age 18, unknown 1272.8
2087 Female, age 72, unknown 1268.9
Ventral tegmental area
nTPM: 1295.9
1915 Female, age 42, unknown 1324.1
2021 Male, age 53, unknown 1302.6
2410 Female, age 72, unknown 1298.9
2223 Female, age 72, unknown 1298.3
1942 Male, age 51, unknown 1280.6
2218 Male, age 76, both hemispheres 1271.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1521.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1521.9
Samples: 139

Max nTPM: 4774.7
Min nTPM: 525.8
Std nTPM: 622.4
Median nTPM: 1403.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4774.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3724.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3568.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3191.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2850.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2792.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2617.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2539.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2473.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2454.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2450.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.9
FF:10158-103A5 76 years, female 29.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 339.9
Pig sample Sample description nTPM
Midbrain
nTPM: 326.4
Samples: 4

Max nTPM: 491.3
Min nTPM: 207.2
Sample A Female 491.3
Sample B Female 363.4
Sample C Male 243.5
Sample D Male 207.2
Periaqueductal gray
nTPM: 236.8
Samples: 3

Max nTPM: 253.8
Min nTPM: 223.4
Sample B Female 253.8
Sample C Male 233.1
Sample D Male 223.4
Substantia nigra
nTPM: 340.0
Samples: 4

Max nTPM: 424.8
Min nTPM: 263.2
Sample A Female 424.8
Sample B Female 390.1
Sample C Male 263.2
Sample D Male 281.7
Superior colliculi
nTPM: 335.3
Samples: 4

Max nTPM: 378.1
Min nTPM: 280.7
Sample A Female 357.6
Sample B Female 378.1
Sample C Male 324.7
Sample D Male 280.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.