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RPL39
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1347.9 nTPM
HPA:1347.9 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:365.7 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 1347.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1305.2
2188 Female, age 91, both hemispheres 1341.3
2090 Male, age 80, both hemispheres 1334.1
1984 Male, age 76, both hemispheres 1276.8
2301 Female, age 85, both hemispheres 1268.5
Dorsal cochlear nucleus
nTPM: 1311.3
2802 Male, age 74, right hemisphere 1331.8
2187 Female, age 91, both hemispheres 1328.7
2378 Male, age 80, both hemispheres 1316.0
2370 Male, age 61, both hemispheres 1315.9
2058 Male, age 76, both hemispheres 1263.9
Dorsal tegmental nucleus
nTPM: 1297.4
2326 Male, age 74, both hemispheres 1318.2
2083 Male, age 80, both hemispheres 1317.3
1936 Male, age 76, left hemisphere 1290.4
2358 Male, age 61, both hemispheres 1263.7
Dorsolateral tegmental area
nTPM: 1311.9
2654 Male, age 80, both hemispheres 1334.5
2751 Female, age 85, both hemispheres 1324.2
2360 Male, age 74, both hemispheres 1321.1
2337 Male, age 61, both hemispheres 1311.4
2141 Male, age 76, both hemispheres 1268.4
Kolliker-Fuse nucleus
nTPM: 1298.7
2315 Male, age 76, right hemisphere 1328.7
2163 Male, age 80, both hemispheres 1286.0
2793 Female, age 91, left hemisphere 1281.6
Lateral lemniscal nuclei
nTPM: 1276.7
2746 Female, age 85, left hemisphere 1289.9
2036 Male, age 80, both hemispheres 1288.6
2320 Female, age 91, left hemisphere 1271.4
2169 Male, age 76, both hemispheres 1267.5
2453 Male, age 74, right hemisphere 1266.3
Lateral parabrachial nucleus
nTPM: 1322.3
2792 Male, age 76, both hemispheres 1351.2
2013 Male, age 80, both hemispheres 1330.5
2790 Male, age 61, both hemispheres 1307.7
2139 Female, age 85, right hemisphere 1300.0
Lateral vestibular nucleus
nTPM: 1281.2
2311 Male, age 80, both hemispheres 1297.9
2184 Male, age 76, both hemispheres 1264.6
Locus coeruleus
nTPM: 1290.6
2123 Female, age 91, both hemispheres 1306.3
2317 Female, age 72, unknown 1304.2
2014 Male, age 55, unknown 1291.4
2720 Male, age 74, both hemispheres 1289.6
2788 Male, age 74, unknown 1286.1
2162 Male, age 80, both hemispheres 1283.0
1980 Male, age 76, both hemispheres 1273.6
Medial olivary nucleus
nTPM: 1347.9
1943 Male, age 61, both hemispheres 1383.5
1962 Male, age 76, both hemispheres 1367.8
2138 Female, age 91, both hemispheres 1324.8
2851 Male, age 80, both hemispheres 1315.5
Medial parabrachial nucleus
nTPM: 1294.7
2170 Female, age 91, both hemispheres 1331.6
2463 Female, age 85, right hemisphere 1291.0
2854 Male, age 80, both hemispheres 1289.6
2156 Male, age 61, both hemispheres 1283.3
2786 Male, age 76, both hemispheres 1278.1
Medial periolivary nuclei
nTPM: 1288.7
2081 Male, age 80, both hemispheres 1303.9
2791 Male, age 74, right hemisphere 1299.5
2063 Male, age 76, both hemispheres 1292.6
2458 Female, age 91, both hemispheres 1284.8
2171 Female, age 85, both hemispheres 1262.6
Motor facial nucleus
nTPM: 1280.1
2795 Female, age 91, both hemispheres 1301.3
2126 Male, age 61, both hemispheres 1296.4
2365 Male, age 74, right hemisphere 1296.2
2062 Male, age 76, both hemispheres 1273.5
2697 Female, age 85, both hemispheres 1268.9
2327 Male, age 80, both hemispheres 1244.3
Motor trigeminal nucleus
nTPM: 1280.6
2309 Male, age 76, both hemispheres 1288.6
2560 Male, age 74, both hemispheres 1286.4
2335 Male, age 61, both hemispheres 1279.5
2321 Female, age 91, both hemispheres 1277.3
2079 Male, age 80, both hemispheres 1271.0
Nuclei of the trapezoid body
nTPM: 1278.6
1983 Male, age 76, both hemispheres 1309.5
2166 Male, age 80, both hemispheres 1280.1
2368 Female, age 91, both hemispheres 1273.5
2159 Male, age 61, both hemispheres 1270.3
2735 Female, age 85, both hemispheres 1259.7
Paramedian reticular nucleus
nTPM: 1309.3
2052 Male, age 76, both hemispheres 1337.2
2057 Male, age 80, both hemispheres 1304.6
2050 Female, age 85, both hemispheres 1298.4
2313 Male, age 61, both hemispheres 1297.1
Pontine nuclei
nTPM: 1294.0
2319 Female, age 91, both hemispheres 1321.3
1863 Male, age 55, unknown 1306.1
2454 Male, age 74, left hemisphere 1303.7
2109 Female, age 72, unknown 1292.9
2115 Male, age 80, left hemisphere 1289.5
1968 Male, age 76, left hemisphere 1284.8
2727 Male, age 61, right hemisphere 1282.9
2787 Female, age 85, both hemispheres 1271.0
Pontine raphe nucleus
nTPM: 1292.2
2853 Male, age 76, midline 1295.1
2122 Female, age 85, midline 1289.2
Posteroventral cochlear nucleus
nTPM: 1337.6
2341 Male, age 80, both hemispheres 1390.0
2135 Female, age 91, both hemispheres 1366.9
2371 Male, age 61, both hemispheres 1334.2
2752 Female, age 85, both hemispheres 1306.3
2070 Male, age 76, both hemispheres 1290.5
Principal sensory trigeminal nucleus
nTPM: 1275.4
2367 Female, age 91, left hemisphere 1291.3
2008 Male, age 80, left hemisphere 1278.8
2158 Male, age 61, both hemispheres 1273.9
2324 Male, age 76, both hemispheres 1257.7
Reticular pontine nucleus, caudal
nTPM: 1287.6
2559 Male, age 74, both hemispheres 1314.4
2092 Male, age 76, both hemispheres 1299.8
2457 Female, age 91, both hemispheres 1292.8
2332 Male, age 80, right hemisphere 1243.3
Reticular pontine nucleus, oral
nTPM: 1300.3
1939 Male, age 80, both hemispheres 1321.5
2366 Female, age 91, both hemispheres 1305.9
2012 Female, age 85, both hemispheres 1299.9
2361 Male, age 74, both hemispheres 1291.4
2167 Male, age 76, both hemispheres 1283.0
Reticulotegmental nucleus
nTPM: 1287.9
2452 Male, age 74, both hemispheres 1302.5
2322 Female, age 91, both hemispheres 1288.3
2333 Male, age 80, both hemispheres 1286.1
2325 Male, age 76, both hemispheres 1274.6
Spinal trigeminal nucleus, oral
nTPM: 1280.4
2164 Male, age 80, both hemispheres 1282.8
2737 Female, age 85, both hemispheres 1282.4
1978 Male, age 76, both hemispheres 1276.0
Subcoeruleus area
nTPM: 1305.9
2369 Female, age 85, left hemisphere 1342.8
2451 Male, age 74, both hemispheres 1335.3
1958 Male, age 80, both hemispheres 1297.2
2323 Female, age 91, left hemisphere 1284.2
2089 Male, age 76, left hemisphere 1270.0
Superior olive
nTPM: 1285.3
2020 Male, age 76, both hemispheres 1319.0
2364 Male, age 74, right hemisphere 1294.6
2561 Female, age 91, both hemispheres 1283.7
1875 Female, age 85, both hemispheres 1272.3
2329 Male, age 80, right hemisphere 1257.1
Superior vestibular nucleus
nTPM: 1316.5
2015 Male, age 80, both hemispheres 1333.7
2383 Male, age 74, both hemispheres 1325.7
2061 Male, age 76, both hemispheres 1290.2
Ventral periolivary nuclei
nTPM: 1281.0
2023 Male, age 76, both hemispheres 1317.4
2794 Female, age 91, left hemisphere 1292.8
2165 Male, age 80, both hemispheres 1277.7
2130 Female, age 85, both hemispheres 1236.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1280.6
2359 Male, age 61, both hemispheres 1294.3
2456 Female, age 91, both hemispheres 1287.2
2161 Male, age 80, both hemispheres 1285.6
1959 Male, age 76, both hemispheres 1279.5
2840 Female, age 85, both hemispheres 1270.6
2449 Male, age 74, both hemispheres 1266.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 29.9
FF:10165-103B3 76 years, female 30.2
FF:10182-103D2 60 years, female 29.6
Pons
Scaled Tags Per Million: 12.6
FF:10033-101E6 18-54 years, mixed 12.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 365.7
Pig sample Sample description nTPM
Pons
nTPM: 365.7
Samples: 4

Max nTPM: 489.4
Min nTPM: 258.7
Sample A Female 329.4
Sample B Female 258.7
Sample C Male 489.4
Sample D Male 385.3

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by the Knut & Alice Wallenberg Foundation.