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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2689.6 nTPM
HPA:2689.6 nTPM
GTEx:2634.5 nTPM
FANTOM5:923.1 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:20.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 2689.6
Sample id Sample description nTPM
Amygdala
nTPM: 2651.0
2814 Male, age 76, right hemisphere 2685.5
2517 Female, age 94, left hemisphere 2677.6
2695 Female, age 67, right hemisphere 2662.3
2514 Male, age 75, right hemisphere 2628.8
1987 Female, age 91, left hemisphere 2601.1
Basal amygdala
nTPM: 2665.5
2243 Female, age 91, right hemisphere 2740.5
2110 Male, age 80, left hemisphere 2688.3
2685 Female, age 94, left hemisphere 2677.8
1955 Male, age 76, both hemispheres 2662.1
2827 Female, age 67, right hemisphere 2614.4
2609 Male, age 75, right hemisphere 2609.8
Central amygdala
nTPM: 2645.5
2826 Female, age 94, left hemisphere 2772.2
2239 Male, age 80, left hemisphere 2673.6
1905 Male, age 76, both hemispheres 2634.6
2515 Male, age 75, right hemisphere 2594.6
2701 Female, age 91, right hemisphere 2552.6
Corticomedial amygdala
nTPM: 2686.2
2829 Male, age 80, left hemisphere 2730.7
2240 Male, age 76, both hemispheres 2723.3
2429 Female, age 94, left hemisphere 2704.3
2242 Female, age 91, right hemisphere 2699.1
2535 Female, age 67, right hemisphere 2659.7
2428 Male, age 75, right hemisphere 2599.8
Lateral amygdala
nTPM: 2643.2
2534 Female, age 94, left hemisphere 2781.5
2830 Female, age 67, right hemisphere 2663.7
1883 Male, age 76, both hemispheres 2651.0
2516 Male, age 75, right hemisphere 2617.7
2256 Male, age 80, left hemisphere 2585.8
2255 Female, age 91, right hemisphere 2559.5
Stria terminalis, bed nucleus
nTPM: 2689.6
1974 Female, age 91, both hemispheres 2872.9
2486 Female, age 94, both hemispheres 2692.8
2201 Male, age 74, unknown 2502.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2634.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2634.5
Samples: 152

Max nTPM: 9704.4
Min nTPM: 894.5
Std nTPM: 1265.8
Median nTPM: 2447.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 9704.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 8606.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7921.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 7537.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5685.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4974.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4673.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4324.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4200.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 4005.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3970.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3952.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3903.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3880.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3856.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3759.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3747.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3728.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3667.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3548.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3536.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3526.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3501.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 3479.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3423.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3325.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3238.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3227.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3136.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3084.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3084.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3080.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 3069.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3059.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3036.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3028.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3006.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2996.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2980.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2977.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2955.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2943.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2920.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2892.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2887.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2875.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2869.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2852.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2787.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2784.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2757.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2754.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2753.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2740.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2707.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2686.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2672.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2670.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2669.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2660.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2657.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2655.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2634.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2625.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2615.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2583.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2579.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2574.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2566.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2552.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2515.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2496.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2493.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2474.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2473.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2451.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2444.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2416.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2413.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2396.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2382.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2332.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2296.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2290.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2277.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2264.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2263.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2263.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2256.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2241.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2238.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2231.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2164.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2161.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2149.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2132.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2132.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2128.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2124.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2117.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2067.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2051.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2041.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2039.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2024.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2018.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2010.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2009.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1997.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1984.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1981.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1966.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1918.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1889.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1880.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1864.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1862.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1851.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1832.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1822.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1785.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1770.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1733.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1729.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1697.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1693.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1692.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1682.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1654.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1649.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1582.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1569.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1538.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1533.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1516.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1513.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1483.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1439.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1430.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1422.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1411.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1391.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1388.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1380.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1328.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1299.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1279.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1233.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1171.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1132.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 940.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 894.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 923.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 923.1
FF:10151-102I7 76 years, female 923.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 21.3
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 19.1

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