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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2610.3 nTPM
HPA:2610.3 nTPM
GTEx:1030.8 nTPM
FANTOM5:389.1 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 2610.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2523.9
2565 Male, age 75, midline 2608.9
1981 Female, age 72, midline 2552.4
2194 Female, age 79, both hemispheres 2524.2
2816 Male, age 47, midline 2484.6
2048 Male, age 55, midline 2449.3
Cervical spinal cord, dorsal horn
nTPM: 2575.7
2297 Male, age 75, both hemispheres 2670.6
2069 Male, age 47, both hemispheres 2601.7
2721 Male, age 90, both hemispheres 2584.3
2173 Female, age 72, unknown 2561.7
2296 Male, age 66, both hemispheres 2518.4
1877 Male, age 55, unknown 2517.5
Cervical spinal cord, ventral horn
nTPM: 2610.3
2809 Male, age 90, both hemispheres 2786.9
2480 Male, age 75, both hemispheres 2682.3
2098 Female, age 72, unknown 2653.5
2295 Male, age 66, both hemispheres 2544.3
2068 Male, age 55, unknown 2509.8
2820 Female, age 79, both hemispheres 2484.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1030.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1030.8
Samples: 159

Max nTPM: 3336.1
Min nTPM: 376.2
Std nTPM: 491.7
Median nTPM: 910.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3336.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3021.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2848.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2665.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2400.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2057.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1952.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1844.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1806.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1793.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1771.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1757.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1746.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1717.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1693.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1687.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1663.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1612.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1583.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1556.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1549.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1515.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1483.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1423.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1404.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1396.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1393.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1356.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1340.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1340.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1333.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1320.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1320.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1318.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1316.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1314.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1273.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1256.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1252.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1236.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1234.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1229.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1221.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1220.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1192.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1190.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1187.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1186.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1178.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1157.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1140.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1138.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1119.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1117.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1103.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1067.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1055.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1044.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1043.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1040.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1035.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1032.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1029.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1011.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 999.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 989.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 974.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 974.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 968.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 945.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 937.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 936.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 934.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 934.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 932.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 923.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 922.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 919.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 912.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 910.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 909.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 901.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 894.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 890.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 877.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 854.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 844.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 839.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 837.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 837.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 836.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 835.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 834.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 832.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 814.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 799.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 794.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 790.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 785.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 784.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 775.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 763.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 760.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 756.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 754.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 753.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 739.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 737.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 729.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 723.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 722.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 717.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 704.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 701.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 689.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 688.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 687.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 678.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 675.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 674.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 672.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 671.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 668.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 664.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 661.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 659.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 657.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 656.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 655.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 654.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 653.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 649.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 632.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 621.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 616.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 616.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 616.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 615.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 613.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 612.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 610.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 607.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 600.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 597.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 588.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 575.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 557.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 548.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 544.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 535.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 525.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 523.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 514.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 505.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 476.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 473.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 471.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 410.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 376.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 389.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 389.1
FF:10181-103D1 60 years, female 437.9
FF:10159-103A6 76 years, female 340.2

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