MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2602.9 nTPM
HPA:2602.9 nTPM
GTEx:1192.3 nTPM
FANTOM5:478.5 Scaled Tags Per Million
Mouse:0.1 nTPM
Allen mouse:17.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2602.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2487.3
2666 Male, age 74, left hemisphere 2564.9
1827 Male, age 72, unknown 2562.9
2828 Female, age 72, unknown 2520.9
1870 Female, age 42, unknown 2498.9
2019 Male, age 18, unknown 2484.2
2411 Female, age 72, unknown 2478.1
1830 Male, age 51, unknown 2456.1
2219 Male, age 76, both hemispheres 2448.4
1833 Male, age 53, unknown 2447.8
2586 Male, age 75, left hemisphere 2410.7
Dorsal raphe nucleus
nTPM: 2512.2
2298 Female, age 72, unknown 2573.9
2750 Male, age 76, both hemispheres 2551.3
2047 Male, age 72, unknown 2528.4
1828 Male, age 53, unknown 2479.3
2016 Female, age 72, unknown 2427.8
Inferior colliculus
nTPM: 2448.5
2097 Female, age 72, unknown 2464.7
2849 Male, age 72, unknown 2458.9
1848 Female, age 42, unknown 2440.7
1890 Male, age 53, unknown 2429.9
Median raphe nucleus
nTPM: 2592.3
2220 Male, age 76, midline 2592.3
Pedunculopontine tegmental nucleus
nTPM: 2602.9
2338 Male, age 61, both hemispheres 2752.2
2334 Male, age 80, both hemispheres 2582.1
1921 Female, age 85, both hemispheres 2474.3
Periaquaductal grey, anterior
nTPM: 2590.4
1795 Male, age 51, unknown 2681.3
1947 Male, age 18, unknown 2559.0
2502 Female, age 75, unknown 2530.8
Periaquaductal grey, dorsal
nTPM: 2495.4
2850 Male, age 76, both hemispheres 2559.6
1831 Male, age 72, unknown 2530.0
1840 Male, age 53, unknown 2454.0
2464 Female, age 72, unknown 2438.2
Periaquaductal grey, lateral
nTPM: 2503.4
2272 Male, age 74, both hemispheres 2538.8
2140 Male, age 76, both hemispheres 2496.4
2053 Male, age 18, unknown 2474.9
Pretectal area
nTPM: 2599.2
1816 Male, age 51, unknown 2845.1
1944 Female, age 72, unknown 2798.0
2007 Male, age 72, unknown 2681.7
1817 Female, age 42, unknown 2679.1
1815 Male, age 53, unknown 2662.5
2224 Female, age 72, unknown 2522.1
2667 Female, age 75, unknown 2514.5
2825 Male, age 18, unknown 2498.0
2273 Male, age 74, both hemispheres 2481.0
2316 Male, age 76, right hemisphere 2455.2
2407 Male, age 75, both hemispheres 2453.7
Red nucleus
nTPM: 2446.9
2725 Female, age 75, unknown 2548.8
2785 Male, age 18, unknown 2528.9
2588 Male, age 74, left hemisphere 2489.7
2823 Male, age 76, right hemisphere 2465.9
2584 Male, age 75, left hemisphere 2464.0
2503 Female, age 72, unknown 2457.3
1821 Female, age 72, unknown 2418.4
1904 Male, age 53, unknown 2404.4
1865 Male, age 51, unknown 2399.3
1954 Female, age 42, unknown 2397.3
2227 Male, age 72, unknown 2395.5
2769 Male, age 72, unknown 2393.9
Substantia nigra
nTPM: 2531.0
2665 Male, age 74, both hemispheres 2672.7
1889 Female, age 72, unknown 2634.3
1941 Male, age 53, unknown 2589.7
1916 Female, age 42, unknown 2539.3
1851 Male, age 51, unknown 2532.2
2590 Female, age 75, unknown 2513.2
2583 Male, age 75, right hemisphere 2467.8
2409 Female, age 72, unknown 2464.9
2699 Male, age 18, unknown 2457.5
2241 Male, age 72, unknown 2438.4
Superior colliculus
nTPM: 2536.8
2087 Female, age 72, unknown 2634.7
2261 Male, age 18, unknown 2625.3
1913 Female, age 42, unknown 2605.3
1796 Male, age 53, unknown 2602.2
2587 Male, age 74, left hemisphere 2548.5
1995 Male, age 72, unknown 2545.7
2668 Female, age 75, unknown 2503.4
1895 Male, age 76, right hemisphere 2461.9
1839 Male, age 51, unknown 2442.4
2664 Male, age 75, both hemispheres 2399.0
Ventral tegmental area
nTPM: 2536.7
2223 Female, age 72, unknown 2585.3
2218 Male, age 76, both hemispheres 2574.6
2021 Male, age 53, unknown 2548.5
1915 Female, age 42, unknown 2526.8
1942 Male, age 51, unknown 2499.1
2410 Female, age 72, unknown 2486.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1192.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1192.3
Samples: 139

Max nTPM: 3237.9
Min nTPM: 572.8
Std nTPM: 458.2
Median nTPM: 1096.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3237.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2813.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2561.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2507.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2435.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2404.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2367.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2061.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1941.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1892.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1836.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 478.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 478.5
FF:10158-103A5 76 years, female 478.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.3
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.6
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 18.3
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 16.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.