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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2664.9 nTPM
HPA:2664.9 nTPM
FANTOM5:495.0 Scaled Tags Per Million
Allen mouse:12.9 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 2664.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 2519.7
2090 Male, age 80, both hemispheres 2574.7
2188 Female, age 91, both hemispheres 2564.9
2301 Female, age 85, both hemispheres 2482.4
1984 Male, age 76, both hemispheres 2456.9
Dorsal cochlear nucleus
nTPM: 2549.5
2802 Male, age 74, right hemisphere 2578.2
2187 Female, age 91, both hemispheres 2574.4
2378 Male, age 80, both hemispheres 2541.3
2370 Male, age 61, both hemispheres 2532.0
2058 Male, age 76, both hemispheres 2521.7
Dorsal tegmental nucleus
nTPM: 2601.3
2358 Male, age 61, both hemispheres 2791.4
2326 Male, age 74, both hemispheres 2555.5
2083 Male, age 80, both hemispheres 2532.7
1936 Male, age 76, left hemisphere 2525.5
Dorsolateral tegmental area
nTPM: 2579.4
2337 Male, age 61, both hemispheres 2821.9
2654 Male, age 80, both hemispheres 2551.9
2360 Male, age 74, both hemispheres 2526.4
2141 Male, age 76, both hemispheres 2516.5
2751 Female, age 85, both hemispheres 2480.4
Kolliker-Fuse nucleus
nTPM: 2568.2
2163 Male, age 80, both hemispheres 2626.6
2793 Female, age 91, left hemisphere 2566.8
2315 Male, age 76, right hemisphere 2511.1
Lateral lemniscal nuclei
nTPM: 2526.3
2453 Male, age 74, right hemisphere 2579.2
2169 Male, age 76, both hemispheres 2557.3
2320 Female, age 91, left hemisphere 2519.2
2746 Female, age 85, left hemisphere 2502.4
2036 Male, age 80, both hemispheres 2473.6
Lateral parabrachial nucleus
nTPM: 2560.8
2792 Male, age 76, both hemispheres 2597.6
2790 Male, age 61, both hemispheres 2561.7
2013 Male, age 80, both hemispheres 2551.1
2139 Female, age 85, right hemisphere 2532.8
Lateral vestibular nucleus
nTPM: 2580.0
2184 Male, age 76, both hemispheres 2603.5
2311 Male, age 80, both hemispheres 2556.5
Locus coeruleus
nTPM: 2664.9
2014 Male, age 55, unknown 2783.5
2720 Male, age 74, both hemispheres 2758.9
2123 Female, age 91, both hemispheres 2679.8
1980 Male, age 76, both hemispheres 2629.5
2788 Male, age 74, unknown 2624.5
2317 Female, age 72, unknown 2603.6
2162 Male, age 80, both hemispheres 2574.8
Medial olivary nucleus
nTPM: 2560.4
2851 Male, age 80, both hemispheres 2603.1
1962 Male, age 76, both hemispheres 2554.8
2138 Female, age 91, both hemispheres 2550.2
1943 Male, age 61, both hemispheres 2533.5
Medial parabrachial nucleus
nTPM: 2549.1
2156 Male, age 61, both hemispheres 2610.6
2170 Female, age 91, both hemispheres 2582.8
2854 Male, age 80, both hemispheres 2579.2
2786 Male, age 76, both hemispheres 2539.2
2463 Female, age 85, right hemisphere 2433.8
Medial periolivary nuclei
nTPM: 2527.9
2063 Male, age 76, both hemispheres 2545.9
2458 Female, age 91, both hemispheres 2539.3
2081 Male, age 80, both hemispheres 2527.7
2171 Female, age 85, both hemispheres 2513.7
2791 Male, age 74, right hemisphere 2513.2
Motor facial nucleus
nTPM: 2547.4
2365 Male, age 74, right hemisphere 2610.8
2795 Female, age 91, both hemispheres 2556.8
2697 Female, age 85, both hemispheres 2552.9
2062 Male, age 76, both hemispheres 2546.1
2327 Male, age 80, both hemispheres 2508.8
2126 Male, age 61, both hemispheres 2508.7
Motor trigeminal nucleus
nTPM: 2540.8
2335 Male, age 61, both hemispheres 2576.2
2560 Male, age 74, both hemispheres 2556.4
2079 Male, age 80, both hemispheres 2528.4
2321 Female, age 91, both hemispheres 2523.2
2309 Male, age 76, both hemispheres 2519.7
Nuclei of the trapezoid body
nTPM: 2525.8
2159 Male, age 61, both hemispheres 2584.2
1983 Male, age 76, both hemispheres 2561.7
2166 Male, age 80, both hemispheres 2510.1
2735 Female, age 85, both hemispheres 2496.8
2368 Female, age 91, both hemispheres 2476.2
Paramedian reticular nucleus
nTPM: 2543.5
2313 Male, age 61, both hemispheres 2568.9
2050 Female, age 85, both hemispheres 2554.1
2057 Male, age 80, both hemispheres 2528.5
2052 Male, age 76, both hemispheres 2522.6
Pontine nuclei
nTPM: 2558.6
1863 Male, age 55, unknown 2657.1
2115 Male, age 80, left hemisphere 2557.1
2454 Male, age 74, left hemisphere 2554.9
2109 Female, age 72, unknown 2553.7
1968 Male, age 76, left hemisphere 2546.0
2319 Female, age 91, both hemispheres 2545.1
2787 Female, age 85, both hemispheres 2528.6
2727 Male, age 61, right hemisphere 2526.4
Pontine raphe nucleus
nTPM: 2548.3
2122 Female, age 85, midline 2550.7
2853 Male, age 76, midline 2546.0
Posteroventral cochlear nucleus
nTPM: 2544.8
2341 Male, age 80, both hemispheres 2592.2
2135 Female, age 91, both hemispheres 2580.3
2070 Male, age 76, both hemispheres 2533.6
2371 Male, age 61, both hemispheres 2526.1
2752 Female, age 85, both hemispheres 2492.0
Principal sensory trigeminal nucleus
nTPM: 2548.7
2324 Male, age 76, both hemispheres 2587.0
2158 Male, age 61, both hemispheres 2563.1
2367 Female, age 91, left hemisphere 2539.1
2008 Male, age 80, left hemisphere 2505.5
Reticular pontine nucleus, caudal
nTPM: 2514.0
2092 Male, age 76, both hemispheres 2539.8
2559 Male, age 74, both hemispheres 2509.4
2457 Female, age 91, both hemispheres 2504.4
2332 Male, age 80, right hemisphere 2502.5
Reticular pontine nucleus, oral
nTPM: 2522.0
2167 Male, age 76, both hemispheres 2546.0
1939 Male, age 80, both hemispheres 2537.1
2366 Female, age 91, both hemispheres 2536.5
2012 Female, age 85, both hemispheres 2496.8
2361 Male, age 74, both hemispheres 2493.7
Reticulotegmental nucleus
nTPM: 2565.9
2452 Male, age 74, both hemispheres 2590.8
2322 Female, age 91, both hemispheres 2567.2
2333 Male, age 80, both hemispheres 2555.4
2325 Male, age 76, both hemispheres 2550.3
Spinal trigeminal nucleus, oral
nTPM: 2564.1
2164 Male, age 80, both hemispheres 2611.3
2737 Female, age 85, both hemispheres 2557.5
1978 Male, age 76, both hemispheres 2523.5
Subcoeruleus area
nTPM: 2537.6
2323 Female, age 91, left hemisphere 2594.5
2451 Male, age 74, both hemispheres 2563.7
1958 Male, age 80, both hemispheres 2555.4
2089 Male, age 76, left hemisphere 2504.3
2369 Female, age 85, left hemisphere 2470.2
Superior olive
nTPM: 2530.8
2561 Female, age 91, both hemispheres 2560.9
2364 Male, age 74, right hemisphere 2543.4
2020 Male, age 76, both hemispheres 2541.9
1875 Female, age 85, both hemispheres 2507.9
2329 Male, age 80, right hemisphere 2500.1
Superior vestibular nucleus
nTPM: 2538.5
2383 Male, age 74, both hemispheres 2561.3
2015 Male, age 80, both hemispheres 2528.7
2061 Male, age 76, both hemispheres 2525.6
Ventral periolivary nuclei
nTPM: 2547.1
2794 Female, age 91, left hemisphere 2599.5
2130 Female, age 85, both hemispheres 2530.5
2023 Male, age 76, both hemispheres 2529.9
2165 Male, age 80, both hemispheres 2528.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 2561.2
2359 Male, age 61, both hemispheres 2608.7
2840 Female, age 85, both hemispheres 2558.8
2449 Male, age 74, both hemispheres 2558.0
2161 Male, age 80, both hemispheres 2556.5
1959 Male, age 76, both hemispheres 2546.8
2456 Female, age 91, both hemispheres 2538.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 495.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 495.0
FF:10165-103B3 76 years, female 574.3
FF:10182-103D2 60 years, female 415.6
Pons
Scaled Tags Per Million: 384.8
FF:10033-101E6 18-54 years, mixed 384.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 12.9
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 13.8
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 12.0

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