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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:912.5 nTPM
HPA:912.5 nTPM
GTEx:837.2 nTPM
FANTOM5:713.8 Scaled Tags Per Million
Mouse:319.4 nTPM
Allen mouse:18.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 912.5
Sample id Sample description nTPM
Amygdala
nTPM: 880.2
2514 Male, age 75, right hemisphere 912.6
1987 Female, age 91, left hemisphere 893.7
2814 Male, age 76, right hemisphere 875.9
2517 Female, age 94, left hemisphere 868.6
2695 Female, age 67, right hemisphere 850.4
Basal amygdala
nTPM: 856.7
2609 Male, age 75, right hemisphere 880.6
2243 Female, age 91, right hemisphere 877.8
1955 Male, age 76, both hemispheres 865.4
2110 Male, age 80, left hemisphere 862.8
2685 Female, age 94, left hemisphere 853.1
2827 Female, age 67, right hemisphere 800.8
Central amygdala
nTPM: 854.4
2239 Male, age 80, left hemisphere 873.2
1905 Male, age 76, both hemispheres 856.3
2515 Male, age 75, right hemisphere 855.0
2701 Female, age 91, right hemisphere 847.7
2826 Female, age 94, left hemisphere 839.8
Corticomedial amygdala
nTPM: 880.6
2829 Male, age 80, left hemisphere 923.9
2242 Female, age 91, right hemisphere 904.5
2428 Male, age 75, right hemisphere 894.7
2429 Female, age 94, left hemisphere 878.9
2240 Male, age 76, both hemispheres 866.7
2535 Female, age 67, right hemisphere 814.9
Lateral amygdala
nTPM: 846.6
2516 Male, age 75, right hemisphere 886.4
1883 Male, age 76, both hemispheres 882.0
2534 Female, age 94, left hemisphere 845.4
2255 Female, age 91, right hemisphere 833.5
2256 Male, age 80, left hemisphere 828.9
2830 Female, age 67, right hemisphere 803.1
Stria terminalis, bed nucleus
nTPM: 912.5
1974 Female, age 91, both hemispheres 985.4
2486 Female, age 94, both hemispheres 880.1
2201 Male, age 74, unknown 871.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 837.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 837.2
Samples: 152

Max nTPM: 2924.9
Min nTPM: 355.9
Std nTPM: 363.7
Median nTPM: 766.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2924.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2125.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2054.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2018.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1848.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1776.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1495.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1492.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1489.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1438.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1411.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1337.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1303.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1295.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1272.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1253.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1227.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1213.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1196.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1156.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1152.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1105.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1099.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1097.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1091.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1047.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1045.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1025.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1022.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1019.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1014.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1011.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1010.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1008.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 969.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 965.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 952.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 934.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 931.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 929.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 913.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 910.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 904.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 895.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 888.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 883.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 867.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 850.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 848.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 844.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 841.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 832.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 829.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 822.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 821.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 820.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 818.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 813.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 805.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 804.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 800.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 795.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 795.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 792.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 789.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 788.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 787.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 786.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 784.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 784.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 780.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 779.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 774.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 773.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 771.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 767.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 765.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 760.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 746.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 746.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 739.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 731.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 728.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 722.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 720.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 713.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 707.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 706.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 704.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 704.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 702.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 700.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 697.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 697.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 696.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 687.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 687.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 686.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 686.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 685.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 684.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 683.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 675.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 674.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 667.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 664.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 659.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 658.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 657.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 654.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 639.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 636.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 635.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 626.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 624.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 615.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 607.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 596.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 584.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 580.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 577.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 573.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 571.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 570.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 567.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 561.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 553.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 550.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 537.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 533.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 533.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 530.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 529.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 522.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 518.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 509.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 503.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 502.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 498.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 485.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 474.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 469.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 468.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 468.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 466.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 462.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 448.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 433.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 430.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 388.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 373.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 355.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 713.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 713.8
FF:10151-102I7 76 years, female 713.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 319.5
Samples: 4

Max nTPM: 344.4
Min nTPM: 298.9
Sample A Male 320.3
Sample B Male 344.4
Sample C Female 298.9
Sample D Female 314.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 19.8
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 17.4

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