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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:914.2 nTPM
HPA:914.2 nTPM
FANTOM5:660.4 Scaled Tags Per Million
Allen mouse:6.3 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 914.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 840.9
2188 Female, age 91, both hemispheres 855.2
2090 Male, age 80, both hemispheres 848.2
2301 Female, age 85, both hemispheres 841.8
1984 Male, age 76, both hemispheres 818.3
Dorsal cochlear nucleus
nTPM: 852.2
2187 Female, age 91, both hemispheres 872.4
2370 Male, age 61, both hemispheres 871.8
2378 Male, age 80, both hemispheres 842.3
2058 Male, age 76, both hemispheres 839.6
2802 Male, age 74, right hemisphere 834.6
Dorsal tegmental nucleus
nTPM: 869.4
2326 Male, age 74, both hemispheres 877.7
2083 Male, age 80, both hemispheres 872.2
1936 Male, age 76, left hemisphere 864.8
2358 Male, age 61, both hemispheres 862.8
Dorsolateral tegmental area
nTPM: 877.5
2360 Male, age 74, both hemispheres 909.9
2751 Female, age 85, both hemispheres 878.8
2654 Male, age 80, both hemispheres 872.1
2141 Male, age 76, both hemispheres 866.5
2337 Male, age 61, both hemispheres 860.2
Kolliker-Fuse nucleus
nTPM: 878.3
2163 Male, age 80, both hemispheres 902.6
2793 Female, age 91, left hemisphere 868.2
2315 Male, age 76, right hemisphere 864.3
Lateral lemniscal nuclei
nTPM: 862.7
2169 Male, age 76, both hemispheres 885.7
2036 Male, age 80, both hemispheres 883.9
2746 Female, age 85, left hemisphere 857.3
2453 Male, age 74, right hemisphere 844.2
2320 Female, age 91, left hemisphere 842.5
Lateral parabrachial nucleus
nTPM: 866.6
2139 Female, age 85, right hemisphere 876.3
2013 Male, age 80, both hemispheres 872.9
2792 Male, age 76, both hemispheres 859.8
2790 Male, age 61, both hemispheres 857.4
Lateral vestibular nucleus
nTPM: 878.1
2184 Male, age 76, both hemispheres 894.5
2311 Male, age 80, both hemispheres 861.7
Locus coeruleus
nTPM: 888.9
2014 Male, age 55, unknown 915.1
2123 Female, age 91, both hemispheres 911.7
2788 Male, age 74, unknown 897.7
1980 Male, age 76, both hemispheres 885.6
2317 Female, age 72, unknown 876.3
2720 Male, age 74, both hemispheres 874.5
2162 Male, age 80, both hemispheres 861.3
Medial olivary nucleus
nTPM: 880.7
1943 Male, age 61, both hemispheres 926.8
2138 Female, age 91, both hemispheres 883.7
2851 Male, age 80, both hemispheres 858.0
1962 Male, age 76, both hemispheres 854.1
Medial parabrachial nucleus
nTPM: 871.6
2170 Female, age 91, both hemispheres 897.7
2854 Male, age 80, both hemispheres 881.6
2156 Male, age 61, both hemispheres 869.3
2786 Male, age 76, both hemispheres 864.1
2463 Female, age 85, right hemisphere 845.4
Medial periolivary nuclei
nTPM: 866.1
2791 Male, age 74, right hemisphere 935.2
2063 Male, age 76, both hemispheres 874.8
2171 Female, age 85, both hemispheres 861.5
2081 Male, age 80, both hemispheres 832.3
2458 Female, age 91, both hemispheres 826.7
Motor facial nucleus
nTPM: 866.2
2365 Male, age 74, right hemisphere 930.2
2062 Male, age 76, both hemispheres 884.2
2126 Male, age 61, both hemispheres 862.0
2697 Female, age 85, both hemispheres 854.2
2795 Female, age 91, both hemispheres 837.7
2327 Male, age 80, both hemispheres 828.7
Motor trigeminal nucleus
nTPM: 852.3
2309 Male, age 76, both hemispheres 868.6
2560 Male, age 74, both hemispheres 859.9
2335 Male, age 61, both hemispheres 855.0
2079 Male, age 80, both hemispheres 847.3
2321 Female, age 91, both hemispheres 830.5
Nuclei of the trapezoid body
nTPM: 860.4
1983 Male, age 76, both hemispheres 888.3
2159 Male, age 61, both hemispheres 876.3
2735 Female, age 85, both hemispheres 867.2
2166 Male, age 80, both hemispheres 846.3
2368 Female, age 91, both hemispheres 823.9
Paramedian reticular nucleus
nTPM: 882.2
2050 Female, age 85, both hemispheres 887.4
2057 Male, age 80, both hemispheres 887.4
2313 Male, age 61, both hemispheres 879.7
2052 Male, age 76, both hemispheres 874.3
Pontine nuclei
nTPM: 881.8
2454 Male, age 74, left hemisphere 924.0
1863 Male, age 55, unknown 912.9
2109 Female, age 72, unknown 899.2
2787 Female, age 85, both hemispheres 881.5
2727 Male, age 61, right hemisphere 878.8
1968 Male, age 76, left hemisphere 864.7
2319 Female, age 91, both hemispheres 862.1
2115 Male, age 80, left hemisphere 831.0
Pontine raphe nucleus
nTPM: 882.7
2853 Male, age 76, midline 888.0
2122 Female, age 85, midline 877.4
Posteroventral cochlear nucleus
nTPM: 858.6
2752 Female, age 85, both hemispheres 874.7
2371 Male, age 61, both hemispheres 868.4
2070 Male, age 76, both hemispheres 852.6
2135 Female, age 91, both hemispheres 851.8
2341 Male, age 80, both hemispheres 845.3
Principal sensory trigeminal nucleus
nTPM: 870.1
2324 Male, age 76, both hemispheres 888.7
2158 Male, age 61, both hemispheres 867.7
2008 Male, age 80, left hemisphere 867.3
2367 Female, age 91, left hemisphere 856.6
Reticular pontine nucleus, caudal
nTPM: 853.8
2559 Male, age 74, both hemispheres 876.3
2092 Male, age 76, both hemispheres 871.7
2457 Female, age 91, both hemispheres 837.9
2332 Male, age 80, right hemisphere 829.1
Reticular pontine nucleus, oral
nTPM: 884.9
2361 Male, age 74, both hemispheres 909.1
1939 Male, age 80, both hemispheres 892.7
2012 Female, age 85, both hemispheres 883.3
2167 Male, age 76, both hemispheres 878.9
2366 Female, age 91, both hemispheres 860.7
Reticulotegmental nucleus
nTPM: 852.0
2325 Male, age 76, both hemispheres 873.9
2322 Female, age 91, both hemispheres 851.4
2333 Male, age 80, both hemispheres 841.7
2452 Male, age 74, both hemispheres 841.1
Spinal trigeminal nucleus, oral
nTPM: 864.7
2737 Female, age 85, both hemispheres 869.7
1978 Male, age 76, both hemispheres 865.8
2164 Male, age 80, both hemispheres 858.7
Subcoeruleus area
nTPM: 864.9
2323 Female, age 91, left hemisphere 887.2
1958 Male, age 80, both hemispheres 882.0
2369 Female, age 85, left hemisphere 868.0
2089 Male, age 76, left hemisphere 846.5
2451 Male, age 74, both hemispheres 840.8
Superior olive
nTPM: 875.1
2364 Male, age 74, right hemisphere 950.6
1875 Female, age 85, both hemispheres 891.5
2020 Male, age 76, both hemispheres 869.7
2329 Male, age 80, right hemisphere 837.9
2561 Female, age 91, both hemispheres 825.8
Superior vestibular nucleus
nTPM: 914.2
2383 Male, age 74, both hemispheres 995.2
2015 Male, age 80, both hemispheres 886.8
2061 Male, age 76, both hemispheres 860.6
Ventral periolivary nuclei
nTPM: 857.8
2130 Female, age 85, both hemispheres 873.9
2023 Male, age 76, both hemispheres 870.8
2165 Male, age 80, both hemispheres 859.4
2794 Female, age 91, left hemisphere 826.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 860.4
2359 Male, age 61, both hemispheres 874.7
2449 Male, age 74, both hemispheres 871.8
2840 Female, age 85, both hemispheres 870.5
1959 Male, age 76, both hemispheres 868.1
2161 Male, age 80, both hemispheres 840.3
2456 Female, age 91, both hemispheres 837.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 660.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 656.4
FF:10182-103D2 60 years, female 704.0
FF:10165-103B3 76 years, female 608.7
Pons
Scaled Tags Per Million: 660.4
FF:10033-101E6 18-54 years, mixed 660.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.3
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 6.3
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.