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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:181.3 nTPM
GTEx:181.3 nTPM
FANTOM5:241.9 Scaled Tags Per Million
Mouse:183.2 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 181.3
Samples: 105

Max nTPM: 350.0
Min nTPM: 115.3
Std nTPM: 43.8
Median nTPM:
99_1 64 years, male 350.0
317_1 60 years, male 291.6
109_1 81 years, female 288.6
119_1 70 years, female 278.3
266_1 85 years, male 273.5
162_1 79 years, female 271.6
120_1 70 years, female 267.6
356_1 87 years, female 257.4
447_1 81 years, male 248.8
491_1 89 years, female 247.2
315_1 62 years, female 234.7
379_1 60 years, male 234.2
115_1 83 years, male 233.8
243_1 75 years, male 230.6
41_1 94 years, female 229.5
42_1 85 years, male 227.8
126_1 63 years, male 219.5
355_1 70 years, female 217.8
414_1 84 years, female 217.8
9_1 66 years, female 215.1
347_1 72 years, male 215.0
490_1 67 years, female 214.7
177_1 74 years, male 214.6
89_1 63 years, male 212.0
404_1 82 years, female 210.0
386_1 76 years, male 207.0
375_1 74 years, female 206.5
324_1 76 years, male 205.8
307_1 66 years, female 205.1
452_1 88 years, female 202.6
189_1 76 years, male 200.7
254_1 77 years, female 196.4
173_1 67 years, male 196.2
142_1 61 years, female 195.8
415_1 77 years, female 195.5
117_1 61 years, male 192.1
172_1 72 years, female 192.0
526_1 61 years, male 188.3
354_1 81 years, female 187.5
351_1 91 years, male 186.1
377_1 82 years, female 185.0
352_1 62 years, male 184.1
153_1 70 years, female 183.5
503_1 68 years, male 183.3
319_1 81 years, male 180.5
349_1 83 years, male 178.4
35_1 74 years, female 174.8
32_1 67 years, male 174.0
389_1 86 years, female 173.5
6_1 73 years, female 173.1
246_1 77 years, male 173.0
145_1 84 years, male 171.4
251_1 78 years, male 170.7
394_1 75 years, female 170.5
2_1 77 years, female 169.6
384_1 83 years, male 169.3
313_1 79 years, female 168.6
17_1 71 years, male 167.8
149_1 88 years, male 167.7
311_1 78 years, male 166.8
353_1 82 years, female 165.2
413_1 59 years, female 165.1
468_1 89 years, male 165.0
229_1 69 years, female 164.9
350_1 84 years, female 164.4
499_1 55 years, female 162.9
308_1 70 years, female 159.6
335_1 73 years, female 159.6
292_1 71 years, male 159.4
506_1 65 years, male 156.5
139_1 64 years, female 156.4
286_1 68 years, female 155.2
396_1 62 years, male 151.6
43_1 64 years, female 151.5
348_1 84 years, male 151.0
517_1 88 years, male 149.1
4_1 88 years, female 149.0
18_1 88 years, male 149.0
321_1 62 years, female 147.2
237_1 82 years, male 146.7
265_1 87 years, male 146.7
466_1 57 years, female 145.7
295_1 61 years, female 144.5
81_1 67 years, male 143.4
291_1 76 years, male 142.9
480_1 63 years, male 142.6
518_1 75 years, female 141.9
293_1 68 years, female 141.6
137_1 83 years, male 140.5
322_1 76 years, male 139.7
425_1 59 years, female 137.5
264_1 73 years, female 136.0
217_1 76 years, male 134.4
406_1 79 years, male 134.2
163_1 78 years, male 134.0
376_1 75 years, female 133.9
405_1 91 years, male 133.5
314_1 67 years, male 130.5
495_1 57 years, female 129.5
316_1 62 years, male 127.8
218_1 71 years, female 126.4
318_1 68 years, male 123.2
320_1 89 years, female 120.8
288_1 66 years, female 117.9
501_1 88 years, male 115.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 241.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 241.9
FF:10030-101E3 24-65 years, mixed 241.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 183.2
Mouse sample Sample description nTPM
Retina
nTPM: 183.2
Samples: 4

Max nTPM: 210.0
Min nTPM: 162.5
Sample A Male 183.6
Sample B Male 176.8
Sample C Female 210.0
Sample D Female 162.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.