MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:898.5 nTPM
HPA:898.5 nTPM
GTEx:649.5 nTPM
FANTOM5:559.7 Scaled Tags Per Million
Mouse:155.9 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 898.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 852.6
2411 Female, age 72, unknown 902.4
1870 Female, age 42, unknown 893.2
1833 Male, age 53, unknown 870.2
1827 Male, age 72, unknown 863.8
1830 Male, age 51, unknown 859.0
2019 Male, age 18, unknown 841.0
2219 Male, age 76, both hemispheres 840.3
2828 Female, age 72, unknown 838.7
2586 Male, age 75, left hemisphere 811.1
2666 Male, age 74, left hemisphere 806.5
Dorsal raphe nucleus
nTPM: 896.3
2298 Female, age 72, unknown 951.7
2047 Male, age 72, unknown 904.7
2750 Male, age 76, both hemispheres 881.8
1828 Male, age 53, unknown 873.4
2016 Female, age 72, unknown 869.8
Inferior colliculus
nTPM: 868.3
2097 Female, age 72, unknown 880.0
2849 Male, age 72, unknown 876.7
1848 Female, age 42, unknown 868.6
1890 Male, age 53, unknown 847.8
Median raphe nucleus
nTPM: 892.4
2220 Male, age 76, midline 892.4
Pedunculopontine tegmental nucleus
nTPM: 880.9
1921 Female, age 85, both hemispheres 884.5
2334 Male, age 80, both hemispheres 883.0
2338 Male, age 61, both hemispheres 875.1
Periaquaductal grey, anterior
nTPM: 863.8
1947 Male, age 18, unknown 877.0
1795 Male, age 51, unknown 859.4
2502 Female, age 75, unknown 854.8
Periaquaductal grey, dorsal
nTPM: 879.8
2850 Male, age 76, both hemispheres 911.4
1840 Male, age 53, unknown 894.5
2464 Female, age 72, unknown 862.6
1831 Male, age 72, unknown 850.5
Periaquaductal grey, lateral
nTPM: 898.5
2272 Male, age 74, both hemispheres 935.0
2140 Male, age 76, both hemispheres 880.7
2053 Male, age 18, unknown 879.9
Pretectal area
nTPM: 871.5
2273 Male, age 74, both hemispheres 948.7
2224 Female, age 72, unknown 900.7
2825 Male, age 18, unknown 880.1
2667 Female, age 75, unknown 880.0
1944 Female, age 72, unknown 860.5
1817 Female, age 42, unknown 859.8
1815 Male, age 53, unknown 857.9
1816 Male, age 51, unknown 853.0
2007 Male, age 72, unknown 851.1
2407 Male, age 75, both hemispheres 850.0
2316 Male, age 76, right hemisphere 845.0
Red nucleus
nTPM: 850.6
1821 Female, age 72, unknown 889.0
2725 Female, age 75, unknown 869.1
1954 Female, age 42, unknown 860.3
1865 Male, age 51, unknown 854.9
2503 Female, age 72, unknown 853.3
1904 Male, age 53, unknown 851.2
2227 Male, age 72, unknown 850.4
2769 Male, age 72, unknown 849.5
2823 Male, age 76, right hemisphere 846.0
2785 Male, age 18, unknown 843.3
2588 Male, age 74, left hemisphere 820.1
2584 Male, age 75, left hemisphere 819.4
Substantia nigra
nTPM: 859.6
1941 Male, age 53, unknown 882.4
1916 Female, age 42, unknown 881.2
1889 Female, age 72, unknown 879.9
2241 Male, age 72, unknown 877.4
1851 Male, age 51, unknown 875.5
2699 Male, age 18, unknown 864.9
2409 Female, age 72, unknown 849.2
2590 Female, age 75, unknown 843.2
2583 Male, age 75, right hemisphere 824.9
2665 Male, age 74, both hemispheres 817.0
Superior colliculus
nTPM: 858.1
2587 Male, age 74, left hemisphere 900.5
1895 Male, age 76, right hemisphere 871.2
1796 Male, age 53, unknown 864.8
1913 Female, age 42, unknown 861.3
1839 Male, age 51, unknown 860.8
2261 Male, age 18, unknown 855.8
2668 Female, age 75, unknown 851.0
1995 Male, age 72, unknown 848.9
2087 Female, age 72, unknown 839.6
2664 Male, age 75, both hemispheres 827.0
Ventral tegmental area
nTPM: 875.2
2410 Female, age 72, unknown 896.3
2223 Female, age 72, unknown 891.8
1915 Female, age 42, unknown 877.5
2218 Male, age 76, both hemispheres 877.3
1942 Male, age 51, unknown 855.3
2021 Male, age 53, unknown 853.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 649.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 649.5
Samples: 139

Max nTPM: 1654.3
Min nTPM: 257.6
Std nTPM: 212.9
Median nTPM: 601.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1654.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1474.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1427.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1332.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1285.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1239.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1121.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1064.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1041.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 908.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 895.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 559.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 559.7
FF:10158-103A5 76 years, female 559.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.9
Samples: 4

Max nTPM: 162.1
Min nTPM: 148.4
Sample A Male 153.9
Sample B Male 159.1
Sample C Female 148.4
Sample D Female 162.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 9.8
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 7.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.