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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:262.0 nTPM
GTEx:250.4 nTPM
FANTOM5:144.3 Scaled Tags Per Million
Pig:157.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 262.0
Sample id Sample description nTPM
Putamen
nTPM: 262.0
2647 Male, age 75, left hemisphere 347.8
1829 Male, age 74, unknown 301.9
2489 Female, age 72, unknown 269.0
2482 Female, age 94, left hemisphere 258.9
1937 Female, age 91, right hemisphere 251.1
2466 Female, age 79, unknown 231.8
1838 Male, age 80, right hemisphere 173.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 250.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 250.4
Samples: 205

Max nTPM: 987.3
Min nTPM: 82.3
Std nTPM: 122.7
Median nTPM: 231.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 987.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 801.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 774.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 625.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 620.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 449.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 440.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 436.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 436.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 435.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 434.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 426.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 425.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 423.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 422.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 416.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 407.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 403.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 401.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 398.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 397.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 389.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 382.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 367.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 367.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 362.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 360.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 358.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 355.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 353.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 348.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 348.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 347.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 344.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 343.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 339.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 337.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 336.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 335.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 333.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 331.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 328.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 322.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 317.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 317.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 315.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 312.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 312.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 310.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 309.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 307.0
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 305.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 303.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 302.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 300.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 299.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 298.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 297.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 295.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 285.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 284.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 283.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 282.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 282.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 278.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 275.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 275.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 274.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 270.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 269.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 267.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 266.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 266.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 266.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 265.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 263.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 263.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 262.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 261.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 261.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 260.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 260.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 255.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 253.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 253.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 253.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 251.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 250.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 247.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 247.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 247.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 246.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 246.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 242.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 240.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 239.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 238.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 238.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 236.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 235.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 234.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 233.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 231.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 230.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 230.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 230.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 226.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 226.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 226.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 223.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 222.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 222.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 220.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 218.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 217.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 215.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 214.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 213.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 212.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 212.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 212.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 211.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 210.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 208.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 206.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 205.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 203.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 202.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 202.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 200.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 198.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 198.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 197.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 196.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 196.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 194.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 194.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 194.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 193.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 192.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 192.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 190.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 186.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 182.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 182.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 181.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 180.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 179.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 178.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 178.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 176.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 175.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 171.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 170.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 165.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 163.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 161.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 160.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 157.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 153.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 153.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 152.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 151.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 149.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 148.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 148.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 148.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 147.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 145.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 142.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 142.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 141.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 140.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 139.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 136.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 133.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 132.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 131.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 130.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 128.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 127.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 126.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 125.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 124.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 124.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 124.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 123.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 119.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 114.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 112.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 111.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 108.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 106.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 105.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 105.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 105.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 103.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 101.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 101.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 97.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 94.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 87.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 85.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 82.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 82.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 144.3
FF:10176-103C5 60 years, female 144.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 157.5
Pig sample Sample description nTPM
Putamen
nTPM: 157.5
Samples: 4

Max nTPM: 176.6
Min nTPM: 106.1
Sample A Female 176.6
Sample B Female 106.1
Sample C Male 171.7
Sample D Male 175.7

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