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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:372.1 nTPM
GTEx:501.4 nTPM
FANTOM5:520.9 Scaled Tags Per Million
Pig:245.6 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 372.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 372.1
2583 Male, age 75, right hemisphere 447.8
1851 Male, age 51, unknown 407.2
1889 Female, age 72, unknown 383.7
2590 Female, age 75, unknown 380.1
2665 Male, age 74, both hemispheres 377.5
1941 Male, age 53, unknown 366.6
2241 Male, age 72, unknown 349.3
1916 Female, age 42, unknown 343.0
2699 Male, age 18, unknown 337.8
2409 Female, age 72, unknown 328.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 501.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 501.4
Samples: 139

Max nTPM: 1118.7
Min nTPM: 160.6
Std nTPM: 197.9
Median nTPM: 475.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1118.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 991.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 962.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 934.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 914.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 871.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 870.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 849.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 838.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 823.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 821.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 812.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 803.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 802.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 796.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 782.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 776.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 762.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 739.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 736.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 731.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 729.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 713.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 703.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 703.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 694.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 669.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 660.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 656.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 652.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 645.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 638.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 637.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 633.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 632.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 621.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 616.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 615.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 614.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 608.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 605.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 603.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 600.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 598.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 577.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 568.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 566.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 553.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 542.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 540.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 538.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 528.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 527.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 527.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 523.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 520.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 516.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 508.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 507.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 503.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 498.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 495.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 492.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 492.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 491.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 491.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 485.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 483.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 479.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 475.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 475.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 469.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 466.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 462.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 460.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 460.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 454.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 450.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 446.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 445.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 444.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 434.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 434.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 426.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 425.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 420.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 418.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 418.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 417.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 402.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 401.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 400.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 390.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 389.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 383.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 381.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 376.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 374.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 372.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 372.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 371.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 364.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 363.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 361.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 361.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 359.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 357.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 356.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 356.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 337.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 327.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 313.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 309.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 304.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 301.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 297.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 296.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 292.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 291.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 289.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 288.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 285.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 280.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 276.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 269.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 266.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 265.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 244.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 236.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 227.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 226.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 209.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 202.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 186.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 181.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 173.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 170.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 160.6
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 520.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 520.9
FF:10158-103A5 76 years, female 520.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 245.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 245.7
Samples: 4

Max nTPM: 316.8
Min nTPM: 166.6
Sample A Female 258.7
Sample B Female 166.6
Sample C Male 240.5
Sample D Male 316.8

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