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GAPDH
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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:2845.2 nTPM
HPA:2845.2 nTPM
FANTOM5:3763.4 Scaled Tags Per Million
Mouse:0.0 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 2845.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 2543.8
2301 Female, age 85, both hemispheres 2606.5
2188 Female, age 91, both hemispheres 2584.0
2090 Male, age 80, both hemispheres 2530.5
1984 Male, age 76, both hemispheres 2454.2
Area postrema
nTPM: 2625.7
2799 Male, age 61, both hemispheres 2760.5
2054 Male, age 76, both hemispheres 2675.7
2306 Male, age 80, both hemispheres 2440.9
Cuneate nuclei
nTPM: 2523.6
2131 Male, age 76, both hemispheres 2618.1
2376 Male, age 61, both hemispheres 2546.9
2381 Male, age 80, both hemispheres 2405.6
Dorsal cochlear nucleus
nTPM: 2569.1
2187 Female, age 91, both hemispheres 2644.5
2802 Male, age 74, right hemisphere 2635.4
2058 Male, age 76, both hemispheres 2603.9
2370 Male, age 61, both hemispheres 2523.4
2378 Male, age 80, both hemispheres 2438.0
Dorsal medullary reticular nucleus
nTPM: 2594.4
2040 Female, age 85, both hemispheres 2845.7
2088 Male, age 76, both hemispheres 2474.2
2373 Male, age 61, both hemispheres 2463.3
Dorsal motor vagal complex
nTPM: 2585.7
2133 Female, age 91, both hemispheres 2785.6
2000 Male, age 74, unknown 2735.8
2844 Male, age 55, unknown 2631.0
2797 Male, age 61, both hemispheres 2603.1
2813 Female, age 72, unknown 2596.7
2643 Male, age 74, both hemispheres 2575.0
2185 Male, age 76, both hemispheres 2511.8
2807 Female, age 85, both hemispheres 2246.6
Dorsal tegmental nucleus
nTPM: 2683.6
2358 Male, age 61, both hemispheres 2825.4
2083 Male, age 80, both hemispheres 2802.5
2326 Male, age 74, both hemispheres 2610.5
1936 Male, age 76, left hemisphere 2496.0
Dorsolateral tegmental area
nTPM: 2620.0
2751 Female, age 85, both hemispheres 2705.7
2337 Male, age 61, both hemispheres 2695.3
2654 Male, age 80, both hemispheres 2676.2
2141 Male, age 76, both hemispheres 2527.3
2360 Male, age 74, both hemispheres 2495.2
Gigantocellular reticular nuclei, medullary
nTPM: 2599.6
2462 Male, age 74, both hemispheres 2686.3
2314 Male, age 61, both hemispheres 2669.1
1876 Female, age 85, both hemispheres 2650.1
2022 Male, age 76, right hemisphere 2553.7
2310 Male, age 80, both hemispheres 2544.9
2387 Female, age 91, both hemispheres 2493.5
Gigantocellular reticular nuclei, pars
nTPM: 2620.7
2084 Female, age 85, both hemispheres 2726.5
2168 Male, age 76, both hemispheres 2714.6
2336 Male, age 61, both hemispheres 2638.2
2330 Male, age 80, both hemispheres 2514.7
2706 Male, age 80, both hemispheres 2509.4
Inferior olive
nTPM: 2711.8
2563 Male, age 74, both hemispheres 2990.4
2085 Female, age 85, both hemispheres 2831.4
2628 Female, age 91, both hemispheres 2697.9
2178 Male, age 61, both hemispheres 2551.9
2379 Male, age 80, both hemispheres 2487.6
Kolliker-Fuse nucleus
nTPM: 2740.8
2163 Male, age 80, both hemispheres 2878.0
2315 Male, age 76, right hemisphere 2704.9
2793 Female, age 91, left hemisphere 2639.5
Lateral lemniscal nuclei
nTPM: 2655.0
2036 Male, age 80, both hemispheres 2817.9
2169 Male, age 76, both hemispheres 2796.6
2746 Female, age 85, left hemisphere 2655.5
2453 Male, age 74, right hemisphere 2560.6
2320 Female, age 91, left hemisphere 2444.6
Lateral medullary reticular nucleus
nTPM: 2723.0
2044 Male, age 76, both hemispheres 2902.3
2305 Male, age 74, both hemispheres 2818.2
2374 Male, age 61, both hemispheres 2692.7
2804 Female, age 91, both hemispheres 2686.5
2190 Female, age 85, both hemispheres 2655.1
2852 Male, age 80, both hemispheres 2583.0
Lateral parabrachial nucleus
nTPM: 2677.3
2139 Female, age 85, right hemisphere 2857.3
2790 Male, age 61, both hemispheres 2639.6
2013 Male, age 80, both hemispheres 2621.7
2792 Male, age 76, both hemispheres 2590.4
Lateral vestibular nucleus
nTPM: 2728.9
2184 Male, age 76, both hemispheres 2844.4
2311 Male, age 80, both hemispheres 2613.4
Locus coeruleus
nTPM: 2828.4
2123 Female, age 91, both hemispheres 3156.1
2720 Male, age 74, both hemispheres 2947.1
2014 Male, age 55, unknown 2865.9
2788 Male, age 74, unknown 2761.3
2317 Female, age 72, unknown 2719.5
2162 Male, age 80, both hemispheres 2689.4
1980 Male, age 76, both hemispheres 2659.6
Medial olivary nucleus
nTPM: 2646.8
2138 Female, age 91, both hemispheres 2731.4
1962 Male, age 76, both hemispheres 2673.8
1943 Male, age 61, both hemispheres 2617.1
2851 Male, age 80, both hemispheres 2565.0
Medial parabrachial nucleus
nTPM: 2714.0
2170 Female, age 91, both hemispheres 2918.2
2854 Male, age 80, both hemispheres 2782.5
2156 Male, age 61, both hemispheres 2703.8
2786 Male, age 76, both hemispheres 2588.5
2463 Female, age 85, right hemisphere 2576.8
Medial periolivary nuclei
nTPM: 2668.0
2171 Female, age 85, both hemispheres 2920.2
2063 Male, age 76, both hemispheres 2767.3
2791 Male, age 74, right hemisphere 2724.4
2081 Male, age 80, both hemispheres 2505.4
2458 Female, age 91, both hemispheres 2422.5
Medial vestibular nucleus
nTPM: 2813.6
2624 Male, age 61, both hemispheres 2980.6
2801 Male, age 74, both hemispheres 2899.4
2803 Female, age 91, both hemispheres 2801.5
2134 Male, age 76, both hemispheres 2753.6
2093 Male, age 80, both hemispheres 2741.6
2743 Female, age 85, both hemispheres 2704.7
Motor facial nucleus
nTPM: 2681.4
2365 Male, age 74, right hemisphere 2831.8
2062 Male, age 76, both hemispheres 2826.5
2697 Female, age 85, both hemispheres 2673.0
2126 Male, age 61, both hemispheres 2596.6
2795 Female, age 91, both hemispheres 2592.8
2327 Male, age 80, both hemispheres 2567.6
Motor hypoglossal nucleus
nTPM: 2677.9
2461 Male, age 61, both hemispheres 2819.9
2125 Female, age 91, both hemispheres 2801.9
2132 Female, age 85, both hemispheres 2685.3
2182 Male, age 80, both hemispheres 2579.7
2277 Male, age 76, both hemispheres 2502.7
Motor trigeminal nucleus
nTPM: 2556.3
2335 Male, age 61, both hemispheres 2665.1
2079 Male, age 80, both hemispheres 2660.3
2560 Male, age 74, both hemispheres 2533.4
2309 Male, age 76, both hemispheres 2503.9
2321 Female, age 91, both hemispheres 2419.0
Nuclei of the trapezoid body
nTPM: 2737.2
2159 Male, age 61, both hemispheres 2926.2
2735 Female, age 85, both hemispheres 2860.0
1983 Male, age 76, both hemispheres 2838.6
2166 Male, age 80, both hemispheres 2629.7
2368 Female, age 91, both hemispheres 2431.6
Nucleus ambiguus
nTPM: 2647.3
2096 Female, age 85, both hemispheres 2651.1
2071 Male, age 76, both hemispheres 2643.6
Nucleus cuneatus
nTPM: 2521.0
2564 Male, age 74, both hemispheres 2717.6
2100 Male, age 76, both hemispheres 2563.2
2562 Male, age 61, both hemispheres 2539.7
2808 Female, age 85, both hemispheres 2472.3
2380 Male, age 80, both hemispheres 2431.3
2805 Female, age 91, both hemispheres 2401.9
Nucleus gracilis
nTPM: 2511.8
2627 Male, age 74, both hemispheres 2855.1
2382 Male, age 80, both hemispheres 2383.2
2299 Female, age 85, both hemispheres 2297.2
Nucleus raphe magnus
nTPM: 2757.1
2160 Male, age 61, both hemispheres 3004.9
2172 Female, age 85, both hemispheres 2950.6
2455 Male, age 74, both hemispheres 2788.5
2051 Male, age 76, both hemispheres 2678.3
2328 Male, age 80, both hemispheres 2651.1
2459 Female, age 91, both hemispheres 2469.1
Nucleus raphe obscurus
nTPM: 2669.1
2800 Male, age 61, midline 2717.8
2845 Female, age 85, midline 2658.2
2142 Male, age 76, midline 2631.4
Nucleus raphe pallidus
nTPM: 2737.9
1924 Male, age 61, midline 2902.6
2183 Male, age 80, midline 2795.0
2145 Male, age 76, midline 2516.2
Nucleus tractus solitarii
nTPM: 2422.3
2144 Female, age 91, right hemisphere 2531.1
2656 Male, age 76, both hemispheres 2461.9
2191 Female, age 85, both hemispheres 2377.8
2307 Male, age 80, both hemispheres 2318.4
Paramedian reticular nucleus
nTPM: 2736.0
2050 Female, age 85, both hemispheres 2877.2
2057 Male, age 80, both hemispheres 2757.5
2313 Male, age 61, both hemispheres 2756.1
2052 Male, age 76, both hemispheres 2553.3
Parvicellular reticular nuclei
nTPM: 2647.7
2119 Male, age 80, both hemispheres 2795.2
2095 Male, age 76, both hemispheres 2666.3
2558 Male, age 74, both hemispheres 2481.5
Parvicellular reticular nuclei, medullary
nTPM: 2676.5
2189 Female, age 91, both hemispheres 2774.7
2091 Female, age 85, both hemispheres 2719.1
2181 Male, age 80, left hemisphere 2535.6
Peritrigeminal nucleus
nTPM: 2845.2
2136 Male, age 76, both hemispheres 2866.8
2067 Female, age 85, both hemispheres 2852.6
2179 Male, age 61, both hemispheres 2816.3
Pontine nuclei
nTPM: 2794.1
2787 Female, age 85, both hemispheres 3140.6
1863 Male, age 55, unknown 3074.3
2727 Male, age 61, right hemisphere 2883.1
2109 Female, age 72, unknown 2832.9
1968 Male, age 76, left hemisphere 2707.7
2454 Male, age 74, left hemisphere 2622.7
2115 Male, age 80, left hemisphere 2566.0
2319 Female, age 91, both hemispheres 2525.2
Pontine raphe nucleus
nTPM: 2696.7
2122 Female, age 85, midline 2769.5
2853 Male, age 76, midline 2624.0
Posteroventral cochlear nucleus
nTPM: 2597.9
2752 Female, age 85, both hemispheres 2708.0
2341 Male, age 80, both hemispheres 2622.5
2070 Male, age 76, both hemispheres 2588.3
2135 Female, age 91, both hemispheres 2537.3
2371 Male, age 61, both hemispheres 2533.2
Prepositus hypoglossal nucleus
nTPM: 2657.8
2855 Female, age 85, right hemisphere 2738.3
2086 Male, age 80, both hemispheres 2577.3
Principal sensory trigeminal nucleus
nTPM: 2696.0
2158 Male, age 61, both hemispheres 2900.8
2324 Male, age 76, both hemispheres 2710.7
2008 Male, age 80, left hemisphere 2692.4
2367 Female, age 91, left hemisphere 2480.2
Reticular pontine nucleus, caudal
nTPM: 2581.1
2092 Male, age 76, both hemispheres 2699.8
2332 Male, age 80, right hemisphere 2671.8
2559 Male, age 74, both hemispheres 2522.1
2457 Female, age 91, both hemispheres 2430.7
Reticular pontine nucleus, oral
nTPM: 2670.7
1939 Male, age 80, both hemispheres 2802.1
2167 Male, age 76, both hemispheres 2745.5
2012 Female, age 85, both hemispheres 2717.8
2361 Male, age 74, both hemispheres 2573.8
2366 Female, age 91, both hemispheres 2514.3
Reticulotegmental nucleus
nTPM: 2655.1
2325 Male, age 76, both hemispheres 2742.8
2322 Female, age 91, both hemispheres 2682.6
2333 Male, age 80, both hemispheres 2637.4
2452 Male, age 74, both hemispheres 2557.7
Spinal trigeminal nucleus, caudal
nTPM: 2616.4
2390 Female, age 91, both hemispheres 2849.1
2447 Male, age 76, both hemispheres 2623.5
2642 Male, age 74, both hemispheres 2583.9
2308 Male, age 80, both hemispheres 2517.6
2312 Male, age 61, both hemispheres 2507.8
Spinal trigeminal nucleus, interpolar
nTPM: 2835.7
2625 Male, age 61, both hemispheres 3346.3
2066 Male, age 76, right hemisphere 2990.0
2033 Male, age 80, both hemispheres 2692.8
2389 Female, age 91, both hemispheres 2609.5
2386 Female, age 85, both hemispheres 2539.9
Spinal trigeminal nucleus, oral
nTPM: 2604.8
2164 Male, age 80, both hemispheres 2723.2
2737 Female, age 85, both hemispheres 2652.3
1978 Male, age 76, both hemispheres 2438.8
Spinal vestibular nucleus
nTPM: 2662.3
2186 Female, age 91, both hemispheres 2735.1
2780 Male, age 80, both hemispheres 2727.6
2796 Male, age 61, both hemispheres 2708.6
2806 Female, age 85, both hemispheres 2665.0
2748 Male, age 76, both hemispheres 2627.4
2384 Male, age 74, both hemispheres 2510.0
Subcoeruleus area
nTPM: 2644.4
1958 Male, age 80, both hemispheres 2744.3
2323 Female, age 91, left hemisphere 2740.3
2369 Female, age 85, left hemisphere 2678.0
2089 Male, age 76, left hemisphere 2531.0
2451 Male, age 74, both hemispheres 2528.3
Superior olive
nTPM: 2646.1
1875 Female, age 85, both hemispheres 2802.2
2364 Male, age 74, right hemisphere 2766.7
2020 Male, age 76, both hemispheres 2608.6
2329 Male, age 80, right hemisphere 2574.1
2561 Female, age 91, both hemispheres 2478.8
Superior vestibular nucleus
nTPM: 2647.8
2383 Male, age 74, both hemispheres 2705.6
2061 Male, age 76, both hemispheres 2626.2
2015 Male, age 80, both hemispheres 2611.5
Ventral medullary reticular nucleus
nTPM: 2540.2
2060 Male, age 76, both hemispheres 2545.8
2372 Male, age 61, both hemispheres 2534.5
Ventral periolivary nuclei
nTPM: 2691.9
2130 Female, age 85, both hemispheres 2895.6
2165 Male, age 80, both hemispheres 2866.1
2023 Male, age 76, both hemispheres 2564.4
2794 Female, age 91, left hemisphere 2441.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2708.9
1986 Male, age 76, both hemispheres 2864.8
2741 Female, age 85, both hemispheres 2766.6
2180 Male, age 61, both hemispheres 2706.3
2302 Female, age 91, both hemispheres 2681.4
2118 Male, age 80, both hemispheres 2525.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 2649.6
2359 Male, age 61, both hemispheres 2794.0
2840 Female, age 85, both hemispheres 2774.3
2449 Male, age 74, both hemispheres 2681.2
1959 Male, age 76, both hemispheres 2669.8
2161 Male, age 80, both hemispheres 2591.1
2456 Female, age 91, both hemispheres 2387.4

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3763.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1598.8
FF:10182-103D2 60 years, female 1895.7
FF:10165-103B3 76 years, female 1301.8
Medulla oblongata
Scaled Tags Per Million: 2097.2
FF:10038-101F2 18-64 years, mixed 3309.2
FF:10174-103C3 60 years, female 1820.8
FF:10155-103A2 76 years, female 1161.6
Pons
Scaled Tags Per Million: 3763.4
FF:10033-101E6 18-54 years, mixed 3763.4

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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