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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:220.4 nTPM
HPA:220.4 nTPM
GTEx:249.9 nTPM
FANTOM5:500.1 Scaled Tags Per Million
Pig:158.7 nTPM
Mouse:744.3 nTPM
Allen mouse:29.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 220.4
Sample id Sample description nTPM
Amygdala
nTPM: 218.6
2814 Male, age 76, right hemisphere 240.4
2514 Male, age 75, right hemisphere 238.1
2695 Female, age 67, right hemisphere 222.7
1987 Female, age 91, left hemisphere 203.0
2517 Female, age 94, left hemisphere 188.8
Basal amygdala
nTPM: 186.5
1955 Male, age 76, both hemispheres 205.6
2110 Male, age 80, left hemisphere 205.5
2609 Male, age 75, right hemisphere 194.1
2685 Female, age 94, left hemisphere 178.4
2243 Female, age 91, right hemisphere 176.6
2827 Female, age 67, right hemisphere 158.7
Central amygdala
nTPM: 201.7
1905 Male, age 76, both hemispheres 219.8
2515 Male, age 75, right hemisphere 217.8
2826 Female, age 94, left hemisphere 202.0
2239 Male, age 80, left hemisphere 194.1
2701 Female, age 91, right hemisphere 174.8
Corticomedial amygdala
nTPM: 196.4
2428 Male, age 75, right hemisphere 217.5
2829 Male, age 80, left hemisphere 216.7
2240 Male, age 76, both hemispheres 208.0
2429 Female, age 94, left hemisphere 204.2
2242 Female, age 91, right hemisphere 183.8
2535 Female, age 67, right hemisphere 148.1
Lateral amygdala
nTPM: 194.7
1883 Male, age 76, both hemispheres 234.0
2516 Male, age 75, right hemisphere 229.7
2534 Female, age 94, left hemisphere 196.3
2830 Female, age 67, right hemisphere 180.0
2256 Male, age 80, left hemisphere 170.4
2255 Female, age 91, right hemisphere 157.8
Stria terminalis, bed nucleus
nTPM: 220.4
1974 Female, age 91, both hemispheres 247.4
2486 Female, age 94, both hemispheres 220.2
2201 Male, age 74, unknown 193.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 249.9
Samples: 152

Max nTPM: 524.3
Min nTPM: 95.9
Std nTPM: 57.8
Median nTPM: 245.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 524.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 455.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 439.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 368.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 351.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 349.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 337.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 337.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 333.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 327.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 327.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 325.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 323.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 318.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 313.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 312.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 311.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 310.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 309.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 306.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 301.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 301.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 298.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 298.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 296.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 296.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 292.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 292.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 292.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 291.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 291.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 291.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 291.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 287.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 286.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 283.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 281.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 279.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 279.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 279.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 278.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 276.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 275.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 275.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 274.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 274.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 273.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 270.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 270.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 269.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 267.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 266.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 266.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 265.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 262.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 262.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 262.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 261.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 260.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 259.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 258.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 257.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 257.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 253.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 252.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 251.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 251.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 250.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 249.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 249.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 248.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 247.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 246.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 246.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 245.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 245.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 244.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 244.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 244.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 243.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 242.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 241.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 241.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 241.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 241.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 240.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 240.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 239.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 238.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 238.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 236.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 236.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 236.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 235.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 232.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 232.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 231.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 230.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 229.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 228.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 227.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 227.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 226.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 225.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 222.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 221.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 219.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 218.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 218.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 218.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 216.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 214.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 213.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 212.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 205.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 204.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 203.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 203.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 202.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 202.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 200.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 199.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 199.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 198.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 198.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 195.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 195.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 195.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 194.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 192.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 192.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 190.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 180.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 179.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 179.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 177.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 176.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 175.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 175.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 173.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 173.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 170.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 160.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 153.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 150.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 95.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 500.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 500.1
FF:10151-102I7 76 years, female 500.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.7
Pig sample Sample description nTPM
Amygdala
nTPM: 158.7
Samples: 4

Max nTPM: 191.3
Min nTPM: 130.8
Sample A Female 191.3
Sample B Female 179.9
Sample C Male 130.8
Sample D Male 132.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 744.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 744.3
Samples: 4

Max nTPM: 793.3
Min nTPM: 702.1
Sample A Male 793.3
Sample B Male 744.2
Sample C Female 702.1
Sample D Female 737.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 29.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.9
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 30.6
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 29.1
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 28.8
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 28.5

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