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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:248.3 nTPM
HPA:248.3 nTPM
GTEx:259.5 nTPM
FANTOM5:566.2 Scaled Tags Per Million
Pig:245.8 nTPM
Mouse:840.0 nTPM
Allen mouse:27.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA035738Antibody HPA035739
Glial cells LowNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 248.3
Sample id Sample description nTPM
Hippocampus
nTPM: 204.7
1898 Male, age 80, left hemisphere 256.2
1855 Male, age 76, left hemisphere 208.3
1911 Female, age 85, right hemisphere 197.5
2529 Female, age 94, left hemisphere 194.5
2621 Female, age 67, right hemisphere 194.2
2148 Female, age 91, left hemisphere 177.3
Dentate gyrus
nTPM: 203.6
1927 Female, age 91, both hemispheres 226.2
2010 Male, age 76, both hemispheres 223.4
2528 Male, age 74, both hemispheres 204.4
2530 Female, age 94, left hemisphere 202.1
2246 Female, age 85, both hemispheres 197.1
2531 Female, age 67, both hemispheres 168.5
Entorhinal gyrus
nTPM: 204.6
1938 Female, age 85, left hemisphere 235.6
2764 Male, age 80, right hemisphere 220.4
1787 Male, age 76, left hemisphere 207.0
2117 Female, age 91, right hemisphere 197.6
2686 Male, age 75, right hemisphere 187.0
2613 Female, age 94, left hemisphere 179.9
Hippocampus, CA1
nTPM: 219.1
2749 Male, age 80, left hemisphere 277.1
1873 Female, age 85, both hemispheres 222.6
2045 Male, age 76, both hemispheres 204.6
2527 Male, age 74, both hemispheres 202.2
2082 Female, age 91, right hemisphere 188.9
Hippocampus, CA2
nTPM: 214.6
1892 Male, age 76, both hemispheres 258.8
1963 Male, age 80, left hemisphere 227.8
2249 Male, age 74, both hemispheres 219.8
1940 Female, age 85, left hemisphere 201.4
2437 Female, age 94, left hemisphere 190.0
2113 Female, age 91, right hemisphere 189.8
Hippocampus, CA3
nTPM: 202.8
2137 Male, age 80, left hemisphere 254.8
1867 Male, age 76, both hemispheres 229.2
1891 Female, age 85, both hemispheres 211.6
2436 Male, age 74, both hemispheres 195.4
2620 Female, age 94, left hemisphere 168.0
2861 Female, age 67, both hemispheres 158.0
Parahippocampal cortex
nTPM: 208.2
1850 Male, age 80, both hemispheres 272.4
1990 Female, age 91, right hemisphere 221.3
1933 Female, age 85, both hemispheres 221.1
2250 Female, age 67, right hemisphere 209.8
2018 Male, age 76, both hemispheres 208.0
2693 Female, age 94, both hemispheres 207.4
2532 Female, age 72, left hemisphere 199.1
2245 Female, age 91, both hemispheres 197.9
2692 Male, age 74, both hemispheres 181.9
2622 Female, age 67, right hemisphere 162.8
Perirhinal gyrus
nTPM: 248.3
1841 Female, age 85, right hemisphere 267.3
1794 Male, age 80, right hemisphere 259.4
1847 Female, age 91, left hemisphere 254.4
2848 Male, age 76, right hemisphere 237.7
2521 Female, age 94, right hemisphere 222.5
Subiculum
nTPM: 200.3
1901 Male, age 80, both hemispheres 226.0
1977 Female, age 85, both hemispheres 222.9
2042 Male, age 76, both hemispheres 195.9
2438 Female, age 94, left hemisphere 195.6
2729 Female, age 91, right hemisphere 184.9
2619 Male, age 74, both hemispheres 176.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 259.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 259.5
Samples: 197

Max nTPM: 667.3
Min nTPM: 123.7
Std nTPM: 65.7
Median nTPM: 251.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 667.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 457.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 446.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 441.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 420.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 415.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 400.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 394.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 393.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 384.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 379.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 366.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 365.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 358.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 356.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 353.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 341.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 340.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 340.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 339.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 338.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 336.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 333.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 332.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 332.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 326.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 321.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 321.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 318.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 309.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 309.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 308.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 307.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 300.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 299.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 298.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 297.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 296.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 296.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 296.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 295.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 294.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 294.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 292.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 292.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 292.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 291.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 289.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 287.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 287.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 287.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 287.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 285.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 284.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 283.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 283.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 282.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 282.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 281.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 279.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 278.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 275.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 274.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 273.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 273.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 272.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 272.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 271.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 270.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 270.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 267.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 266.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 266.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 265.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 265.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 264.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 264.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 263.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 263.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 263.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 262.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 261.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 259.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 259.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 257.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 256.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 256.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 256.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 255.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 254.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 254.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 252.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 252.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 252.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 252.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 252.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 252.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 251.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 251.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 250.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 250.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 249.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 249.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 248.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 247.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 247.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 246.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 246.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 246.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 244.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 244.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 243.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 243.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 243.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 243.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 243.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 241.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 240.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 240.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 240.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 240.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 238.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 237.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 235.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 235.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 235.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 235.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 234.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 234.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 233.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 231.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 231.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 231.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 230.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 229.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 227.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 226.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 225.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 225.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 224.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 222.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 222.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 221.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 221.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 221.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 220.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 217.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 217.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 216.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 214.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 213.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 211.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 211.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 211.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 209.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 209.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 204.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 203.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 202.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 202.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 202.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 201.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 201.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 201.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 200.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 199.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 197.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 197.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 196.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 196.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 195.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 195.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 194.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 194.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 193.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 193.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 192.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 192.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 190.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 190.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 187.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 186.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 185.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 184.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 182.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 181.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 178.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 171.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 171.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 170.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 170.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 168.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 165.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 161.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 155.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 147.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 123.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 566.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 566.2
FF:10169-103B7 60 years, female 645.6
FF:10153-102I9 76 years, female 486.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 245.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 245.8
Samples: 4

Max nTPM: 323.2
Min nTPM: 175.4
Sample A Female 323.2
Sample B Female 245.5
Sample C Male 239.2
Sample D Male 175.4
Entorhinal cortex
nTPM: 198.9
Samples: 4

Max nTPM: 254.4
Min nTPM: 157.4
Sample A Female 187.1
Sample B Female 254.4
Sample C Male 196.7
Sample D Male 157.4
Subiculum
nTPM: 203.0
Samples: 4

Max nTPM: 244.2
Min nTPM: 178.0
Sample A Female 244.2
Sample B Female 189.5
Sample C Male 178.0
Sample D Male 200.2
Ventral hippocampus
nTPM: 205.4
Samples: 4

Max nTPM: 257.0
Min nTPM: 166.8
Sample A Female 257.0
Sample B Female 166.8
Sample C Male 190.7
Sample D Male 207.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 840.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 833.9
Samples: 4

Max nTPM: 902.2
Min nTPM: 774.8
Sample A Male 774.8
Sample B Male 855.7
Sample C Female 803.0
Sample D Female 902.2
Hippocampal formation
nTPM: 840.0
Samples: 4

Max nTPM: 891.7
Min nTPM: 752.6
Sample A Male 876.0
Sample B Male 839.7
Sample C Female 891.7
Sample D Female 752.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.6
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 28.1
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 27.2
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 26.4
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 26.2

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