MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:243.3 nTPM
HPA:243.3 nTPM
GTEx:336.3 nTPM
FANTOM5:728.5 Scaled Tags Per Million
Pig:260.4 nTPM
Mouse:738.9 nTPM
Allen mouse:24.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 243.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 218.2
2411 Female, age 72, unknown 248.7
1870 Female, age 42, unknown 243.5
1827 Male, age 72, unknown 240.8
2019 Male, age 18, unknown 218.1
1833 Male, age 53, unknown 213.2
2828 Female, age 72, unknown 211.9
2666 Male, age 74, left hemisphere 210.5
1830 Male, age 51, unknown 208.9
2219 Male, age 76, both hemispheres 194.1
2586 Male, age 75, left hemisphere 192.8
Dorsal raphe nucleus
nTPM: 221.8
2298 Female, age 72, unknown 243.9
2750 Male, age 76, both hemispheres 228.8
2047 Male, age 72, unknown 215.6
1828 Male, age 53, unknown 215.5
2016 Female, age 72, unknown 204.9
Inferior colliculus
nTPM: 219.7
2097 Female, age 72, unknown 246.6
1848 Female, age 42, unknown 221.1
1890 Male, age 53, unknown 208.4
2849 Male, age 72, unknown 202.7
Median raphe nucleus
nTPM: 230.4
2220 Male, age 76, midline 230.4
Pedunculopontine tegmental nucleus
nTPM: 218.3
1921 Female, age 85, both hemispheres 227.6
2334 Male, age 80, both hemispheres 225.7
2338 Male, age 61, both hemispheres 201.6
Periaquaductal grey, anterior
nTPM: 232.0
1947 Male, age 18, unknown 247.5
2502 Female, age 75, unknown 236.1
1795 Male, age 51, unknown 212.3
Periaquaductal grey, dorsal
nTPM: 208.0
1840 Male, age 53, unknown 212.5
2464 Female, age 72, unknown 212.0
1831 Male, age 72, unknown 211.0
2850 Male, age 76, both hemispheres 196.4
Periaquaductal grey, lateral
nTPM: 198.8
2053 Male, age 18, unknown 215.9
2272 Male, age 74, both hemispheres 197.7
2140 Male, age 76, both hemispheres 182.9
Pretectal area
nTPM: 232.1
1816 Male, age 51, unknown 261.9
2007 Male, age 72, unknown 251.8
1944 Female, age 72, unknown 246.0
1815 Male, age 53, unknown 245.7
1817 Female, age 42, unknown 243.3
2667 Female, age 75, unknown 228.9
2224 Female, age 72, unknown 228.4
2273 Male, age 74, both hemispheres 222.2
2825 Male, age 18, unknown 216.1
2407 Male, age 75, both hemispheres 211.6
2316 Male, age 76, right hemisphere 197.2
Red nucleus
nTPM: 221.9
1821 Female, age 72, unknown 267.8
2503 Female, age 72, unknown 236.3
1954 Female, age 42, unknown 229.5
1865 Male, age 51, unknown 224.8
1904 Male, age 53, unknown 223.2
2725 Female, age 75, unknown 215.6
2227 Male, age 72, unknown 214.5
2769 Male, age 72, unknown 213.6
2785 Male, age 18, unknown 213.1
2588 Male, age 74, left hemisphere 208.8
2823 Male, age 76, right hemisphere 208.7
2584 Male, age 75, left hemisphere 207.0
Substantia nigra
nTPM: 243.3
2241 Male, age 72, unknown 265.6
1941 Male, age 53, unknown 264.7
1889 Female, age 72, unknown 258.7
1851 Male, age 51, unknown 252.2
2409 Female, age 72, unknown 250.6
1916 Female, age 42, unknown 248.5
2665 Male, age 74, both hemispheres 232.4
2590 Female, age 75, unknown 228.0
2583 Male, age 75, right hemisphere 220.3
2699 Male, age 18, unknown 212.3
Superior colliculus
nTPM: 222.4
2261 Male, age 18, unknown 239.2
2668 Female, age 75, unknown 239.0
2587 Male, age 74, left hemisphere 238.0
2087 Female, age 72, unknown 237.8
1796 Male, age 53, unknown 221.9
1913 Female, age 42, unknown 219.7
1839 Male, age 51, unknown 214.1
1895 Male, age 76, right hemisphere 214.0
2664 Male, age 75, both hemispheres 203.0
1995 Male, age 72, unknown 197.8
Ventral tegmental area
nTPM: 235.1
2410 Female, age 72, unknown 255.4
2223 Female, age 72, unknown 245.0
1915 Female, age 42, unknown 236.2
1942 Male, age 51, unknown 231.2
2218 Male, age 76, both hemispheres 226.8
2021 Male, age 53, unknown 216.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 336.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 336.3
Samples: 139

Max nTPM: 674.2
Min nTPM: 178.7
Std nTPM: 90.0
Median nTPM: 314.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 674.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 670.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 622.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 583.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 513.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 510.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 494.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 488.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 473.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 471.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 462.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 728.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 728.5
FF:10158-103A5 76 years, female 728.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 260.4
Pig sample Sample description nTPM
Midbrain
nTPM: 260.5
Samples: 4

Max nTPM: 302.7
Min nTPM: 213.0
Sample A Female 302.7
Sample B Female 262.1
Sample C Male 264.0
Sample D Male 213.0
Periaqueductal gray
nTPM: 193.7
Samples: 3

Max nTPM: 202.2
Min nTPM: 177.8
Sample B Female 201.1
Sample C Male 202.2
Sample D Male 177.8
Substantia nigra
nTPM: 250.1
Samples: 4

Max nTPM: 328.9
Min nTPM: 186.6
Sample A Female 328.9
Sample B Female 227.2
Sample C Male 257.7
Sample D Male 186.6
Superior colliculi
nTPM: 248.4
Samples: 4

Max nTPM: 287.7
Min nTPM: 215.5
Sample A Female 266.4
Sample B Female 215.5
Sample C Male 287.7
Sample D Male 224.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 738.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 738.9
Samples: 4

Max nTPM: 775.2
Min nTPM: 695.3
Sample A Male 695.3
Sample B Male 752.2
Sample C Female 775.2
Sample D Female 732.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.4
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 26.2
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 22.6
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 21.9
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 20.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.