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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:225.5 nTPM
GTEx:225.5 nTPM
FANTOM5:311.7 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:468.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 225.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 225.5
Samples: 105

Max nTPM: 380.3
Min nTPM: 133.8
Std nTPM: 51.0
Median nTPM:
491_1 89 years, female 380.3
139_1 64 years, female 335.5
149_1 88 years, male 329.9
43_1 64 years, female 325.2
490_1 67 years, female 323.0
413_1 59 years, female 317.7
162_1 79 years, female 314.2
466_1 57 years, female 308.0
81_1 67 years, male 307.2
2_1 77 years, female 300.1
415_1 77 years, female 299.8
89_1 63 years, male 299.2
142_1 61 years, female 297.1
501_1 88 years, male 292.3
518_1 75 years, female 289.5
145_1 84 years, male 285.1
217_1 76 years, male 282.7
117_1 61 years, male 279.5
495_1 57 years, female 278.8
126_1 63 years, male 277.0
18_1 88 years, male 274.8
17_1 71 years, male 270.2
32_1 67 years, male 263.0
137_1 83 years, male 262.3
35_1 74 years, female 260.0
324_1 76 years, male 259.4
153_1 70 years, female 258.9
322_1 76 years, male 256.4
348_1 84 years, male 256.2
6_1 73 years, female 254.9
120_1 70 years, female 254.3
119_1 70 years, female 254.1
109_1 81 years, female 252.0
311_1 78 years, male 251.6
288_1 66 years, female 249.3
315_1 62 years, female 249.0
115_1 83 years, male 248.9
468_1 89 years, male 242.7
307_1 66 years, female 242.5
9_1 66 years, female 242.4
42_1 85 years, male 236.7
414_1 84 years, female 235.7
251_1 78 years, male 234.5
499_1 55 years, female 234.2
4_1 88 years, female 229.4
526_1 61 years, male 228.5
316_1 62 years, male 226.5
313_1 79 years, female 221.3
314_1 67 years, male 218.9
335_1 73 years, female 213.6
386_1 76 years, male 212.5
396_1 62 years, male 212.2
291_1 76 years, male 212.1
347_1 72 years, male 211.2
447_1 81 years, male 210.8
265_1 87 years, male 210.4
321_1 62 years, female 209.9
480_1 63 years, male 209.5
506_1 65 years, male 208.2
99_1 64 years, male 207.7
254_1 77 years, female 205.0
377_1 82 years, female 201.9
292_1 71 years, male 201.3
243_1 75 years, male 201.0
266_1 85 years, male 198.9
293_1 68 years, female 198.5
320_1 89 years, female 197.7
425_1 59 years, female 196.3
246_1 77 years, male 195.2
503_1 68 years, male 195.1
286_1 68 years, female 193.9
405_1 91 years, male 193.1
41_1 94 years, female 192.3
517_1 88 years, male 191.2
189_1 76 years, male 190.7
389_1 86 years, female 190.4
406_1 79 years, male 189.3
173_1 67 years, male 189.0
237_1 82 years, male 189.0
319_1 81 years, male 185.2
404_1 82 years, female 183.6
264_1 73 years, female 183.5
229_1 69 years, female 183.3
352_1 62 years, male 182.1
172_1 72 years, female 177.9
295_1 61 years, female 177.9
308_1 70 years, female 177.9
318_1 68 years, male 176.9
384_1 83 years, male 176.7
353_1 82 years, female 173.0
375_1 74 years, female 172.2
351_1 91 years, male 172.0
317_1 60 years, male 170.2
350_1 84 years, female 170.2
349_1 83 years, male 169.7
354_1 81 years, female 165.0
355_1 70 years, female 164.0
177_1 74 years, male 162.9
376_1 75 years, female 162.7
379_1 60 years, male 157.6
452_1 88 years, female 153.8
394_1 75 years, female 145.9
356_1 87 years, female 140.7
218_1 71 years, female 138.4
163_1 78 years, male 133.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 311.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 311.7
FF:10030-101E3 24-65 years, mixed 311.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.7
Pig sample Sample description nTPM
Retina
nTPM: 73.7
Samples: 4

Max nTPM: 83.0
Min nTPM: 67.0
Sample A Female 67.0
Sample B Female 83.0
Sample C Male 71.5
Sample D Male 73.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 468.7
Mouse sample Sample description nTPM
Retina
nTPM: 468.7
Samples: 4

Max nTPM: 551.1
Min nTPM: 410.7
Sample A Male 551.1
Sample B Male 423.3
Sample C Female 410.7
Sample D Female 489.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.