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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:268.4 nTPM
HPA:268.4 nTPM
GTEx:473.0 nTPM
FANTOM5:839.9 Scaled Tags Per Million
Pig:301.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 268.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 237.1
1981 Female, age 72, midline 277.1
2048 Male, age 55, midline 249.5
2816 Male, age 47, midline 225.9
2194 Female, age 79, both hemispheres 222.5
2565 Male, age 75, midline 210.6
Cervical spinal cord, dorsal horn
nTPM: 268.4
2296 Male, age 66, both hemispheres 341.5
2173 Female, age 72, unknown 313.7
2069 Male, age 47, both hemispheres 274.1
1877 Male, age 55, unknown 251.9
2297 Male, age 75, both hemispheres 230.7
2721 Male, age 90, both hemispheres 198.7
Cervical spinal cord, ventral horn
nTPM: 266.7
2480 Male, age 75, both hemispheres 334.4
2098 Female, age 72, unknown 281.7
2809 Male, age 90, both hemispheres 269.0
2295 Male, age 66, both hemispheres 259.5
2068 Male, age 55, unknown 243.7
2820 Female, age 79, both hemispheres 212.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 473.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 473.0
Samples: 159

Max nTPM: 847.4
Min nTPM: 211.1
Std nTPM: 129.1
Median nTPM: 462.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 847.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 808.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 772.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 746.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 746.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 741.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 737.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 700.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 696.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 689.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 688.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 678.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 669.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 664.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 664.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 663.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 662.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 657.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 656.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 644.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 640.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 637.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 637.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 607.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 604.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 603.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 599.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 595.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 594.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 594.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 592.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 588.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 588.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 582.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 571.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 570.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 566.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 563.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 560.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 559.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 558.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 558.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 555.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 555.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 545.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 538.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 530.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 529.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 528.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 528.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 522.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 516.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 514.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 512.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 512.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 509.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 502.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 502.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 497.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 494.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 493.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 493.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 492.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 492.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 487.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 487.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 484.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 482.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 481.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 478.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 478.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 477.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 473.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 472.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 470.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 469.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 467.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 467.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 467.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 462.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 458.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 457.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 455.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 454.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 450.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 444.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 441.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 440.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 438.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 438.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 436.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 432.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 425.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 425.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 424.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 422.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 419.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 418.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 414.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 413.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 412.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 412.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 409.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 408.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 407.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 406.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 398.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 397.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 395.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 394.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 394.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 390.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 389.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 387.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 387.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 385.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 382.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 381.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 381.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 376.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 371.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 370.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 366.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 365.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 363.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 361.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 360.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 357.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 357.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 357.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 353.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 351.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 350.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 349.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 344.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 342.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 342.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 342.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 342.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 338.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 336.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 329.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 322.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 320.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 310.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 308.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 300.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 300.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 297.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 286.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 285.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 284.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 281.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 281.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 250.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 245.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 245.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 218.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 211.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 839.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 839.9
FF:10181-103D1 60 years, female 843.2
FF:10159-103A6 76 years, female 836.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 301.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 250.4
Samples: 4

Max nTPM: 289.4
Min nTPM: 216.4
Sample A Female 238.8
Sample B Female 289.4
Sample C Male 257.1
Sample D Male 216.4
Ventral spinal cord
nTPM: 301.5
Samples: 4

Max nTPM: 322.0
Min nTPM: 277.4
Sample A Female 287.8
Sample B Female 318.9
Sample C Male 277.4
Sample D Male 322.0

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